Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19480

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Deoxyribonucleic from herring sperm 10 mg/mL (C)
4,383,032	+		BPHYT_RS19475	0.59	-1.2
4,383,206	+		BPHYT_RS19475	0.79	-0.1
4,383,321	-				-1.3
4,383,402	+				-0.3
4,383,561	+				+2.0
4,383,583	+				-0.1
4,383,584	-				-0.4
4,383,584	-				-0.2
4,383,658	+				-0.7
4,383,659	-				+1.4
4,383,659	-				-0.8
4,383,661	+				+1.1
4,383,662	-				-0.9
4,383,709	+		BPHYT_RS19480	0.10	-0.5
4,383,709	+		BPHYT_RS19480	0.10	+1.2
4,383,709	+		BPHYT_RS19480	0.10	-1.5
4,383,710	-		BPHYT_RS19480	0.11	+0.3
4,383,710	-		BPHYT_RS19480	0.11	-0.5
4,383,710	-		BPHYT_RS19480	0.11	-0.5
4,383,745	+		BPHYT_RS19480	0.13	-1.8
4,383,745	+		BPHYT_RS19480	0.13	-2.5
4,383,745	+		BPHYT_RS19480	0.13	+0.2
4,383,745	+		BPHYT_RS19480	0.13	+1.0
4,383,746	-		BPHYT_RS19480	0.13	-0.5
4,383,746	-		BPHYT_RS19480	0.13	-1.8
4,383,757	+		BPHYT_RS19480	0.14	-0.7
4,383,757	+		BPHYT_RS19480	0.14	-0.0
4,383,757	+		BPHYT_RS19480	0.14	-2.4
4,383,758	-		BPHYT_RS19480	0.14	-1.4
4,383,841	+		BPHYT_RS19480	0.21	+0.5
4,383,842	-		BPHYT_RS19480	0.21	-0.1
4,383,842	-		BPHYT_RS19480	0.21	+0.7
4,383,842	-		BPHYT_RS19480	0.21	-0.5
4,383,842	-		BPHYT_RS19480	0.21	-0.4
4,383,907	+		BPHYT_RS19480	0.27	+0.0
4,383,908	-		BPHYT_RS19480	0.27	+0.5
4,383,949	+		BPHYT_RS19480	0.30	-0.9
4,384,261	+		BPHYT_RS19480	0.56	+1.2
4,384,261	+		BPHYT_RS19480	0.56	+0.6
4,384,279	+		BPHYT_RS19480	0.57	-3.7
4,384,280	-		BPHYT_RS19480	0.57	+0.1
4,384,280	-		BPHYT_RS19480	0.57	-0.8
4,384,345	+		BPHYT_RS19480	0.63	-0.2
4,384,345	+		BPHYT_RS19480	0.63	+0.0
4,384,346	-		BPHYT_RS19480	0.63	+0.8
4,384,346	-		BPHYT_RS19480	0.63	+0.2
4,384,351	+		BPHYT_RS19480	0.63	-0.1
4,384,417	+		BPHYT_RS19480	0.69	+0.3
4,384,417	+		BPHYT_RS19480	0.69	-3.1
4,384,417	+		BPHYT_RS19480	0.69	+0.6
4,384,564	+		BPHYT_RS19480	0.81	-0.4
4,384,565	-		BPHYT_RS19480	0.81	-0.7
4,384,565	-		BPHYT_RS19480	0.81	-1.2
4,384,565	-		BPHYT_RS19480	0.81	+0.2
4,384,660	+		BPHYT_RS19480	0.89	-1.7
4,384,660	+		BPHYT_RS19480	0.89	+1.1
4,384,661	-		BPHYT_RS19480	0.89	-0.4
4,384,661	-		BPHYT_RS19480	0.89	+0.9
4,384,851	+				-1.8
4,384,852	-				-1.3
4,384,860	+				+0.9
4,384,860	+				+1.7
4,384,860	+				-0.1
4,384,861	-				+0.0
4,384,939	+		BPHYT_RS19485	0.12	-0.6
4,384,940	-		BPHYT_RS19485	0.12	-0.3
4,384,998	-		BPHYT_RS19485	0.20	-2.1
4,385,071	-		BPHYT_RS19485	0.29	+1.4
4,385,200	+		BPHYT_RS19485	0.46	+0.5
4,385,288	+		BPHYT_RS19485	0.58	+0.1
4,385,308	+		BPHYT_RS19485	0.61	+0.9
4,385,501	+		BPHYT_RS19485	0.86	-0.4
4,385,502	-		BPHYT_RS19485	0.86	-0.1
4,385,502	-		BPHYT_RS19485	0.86	-0.5
4,385,571	+				+1.4
4,385,601	-				-0.8
4,385,644	+				+0.1
4,385,645	-				+0.3
4,385,646	+				-0.7
4,385,646	+				-1.0
4,385,646	+				+1.4
4,385,646	+				-0.8
4,385,646	+				-0.1
4,385,646	+				-1.3
4,385,647	-				+1.4
4,385,647	-				-1.0
4,385,686	-		BPHYT_RS19490	0.11	-0.3
4,385,725	+		BPHYT_RS19490	0.16	+0.0