Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15280

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Deoxyribonucleic from herring sperm 10 mg/mL (C)
3,472,807	+				+0.9
3,472,807	+				-0.5
3,472,807	+				-0.5
3,472,807	+				-0.5
3,472,808	-				-0.6
3,472,808	-				+2.4
3,472,808	-				-0.1
3,472,808	-				+0.2
3,472,808	-				+2.4
3,472,812	-				-0.4
3,472,838	+				+0.1
3,472,841	+				+0.1
3,472,893	+		BPHYT_RS15275	0.12	+0.0
3,472,893	+		BPHYT_RS15275	0.12	+1.8
3,472,894	-		BPHYT_RS15275	0.12	+0.7
3,472,894	-		BPHYT_RS15275	0.12	-0.6
3,472,894	-		BPHYT_RS15275	0.12	+1.0
3,473,039	-		BPHYT_RS15275	0.70	-0.4
3,473,039	-		BPHYT_RS15275	0.70	+0.6
3,473,042	+		BPHYT_RS15275	0.71	+0.1
3,473,043	-		BPHYT_RS15275	0.72	-0.3
3,473,461	+				-0.3
3,473,488	-				-1.1
3,473,638	-				+0.1
3,473,748	+				-1.6
3,473,749	-				-3.1
3,473,749	-				+1.6
3,473,750	+				-0.9
3,473,751	-				+0.4
3,474,132	+		BPHYT_RS15280	0.43	-0.9
3,474,132	+		BPHYT_RS15280	0.43	+0.1
3,474,159	+		BPHYT_RS15280	0.45	-0.5
3,474,379	-		BPHYT_RS15280	0.64	+3.0
3,474,411	+		BPHYT_RS15280	0.67	-0.8
3,474,567	+		BPHYT_RS15280	0.81	-0.2
3,474,567	+		BPHYT_RS15280	0.81	-0.8
3,474,573	+		BPHYT_RS15280	0.81	+0.5
3,474,574	-		BPHYT_RS15280	0.81	-0.5
3,474,663	+		BPHYT_RS15280	0.89	-0.9
3,474,663	+		BPHYT_RS15280	0.89	-2.0
3,474,664	-		BPHYT_RS15280	0.89	-1.9
3,474,844	+				+3.0
3,474,845	-				+0.1
3,474,932	+				-0.9
3,474,947	-				+0.5
3,474,948	+				+1.1
3,474,977	+		BPHYT_RS15285	0.12	+0.6
3,474,977	+		BPHYT_RS15285	0.12	+0.5
3,474,978	-		BPHYT_RS15285	0.12	+0.7
3,475,093	-		BPHYT_RS15285	0.33	-1.6
3,475,251	-		BPHYT_RS15285	0.60	+0.7
3,475,257	-		BPHYT_RS15285	0.61	+0.5
3,475,385	+		BPHYT_RS15285	0.84	+0.6
3,475,508	+				+2.4
3,475,508	+				-0.1
3,475,509	-				-1.2
3,475,517	+				+0.9
3,475,518	-				-1.0
3,475,531	+				-0.3
3,475,532	-				-1.8
3,475,604	+				-0.3
3,475,622	+		BPHYT_RS15290	0.32	-0.9
3,475,622	+		BPHYT_RS15290	0.32	+1.2
3,475,622	+		BPHYT_RS15290	0.32	-0.8
3,475,676	+				+1.4
3,475,676	+				-0.3
3,475,713	+				+0.4
3,475,733	-				-0.0
3,475,747	+				+1.1