Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14535

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Deoxyribonucleic from herring sperm 10 mg/mL (C)
3,312,730	-				-0.8
3,312,730	-				-0.5
3,312,748	-				-0.0
3,313,033	+		BPHYT_RS14530	0.35	+0.3
3,313,034	-		BPHYT_RS14530	0.35	-0.4
3,313,034	-		BPHYT_RS14530	0.35	-0.2
3,313,060	-		BPHYT_RS14530	0.39	-1.9
3,313,107	+		BPHYT_RS14530	0.46	-0.1
3,313,222	+		BPHYT_RS14530	0.63	+0.6
3,313,363	+		BPHYT_RS14530	0.84	+0.4
3,313,493	+				-0.6
3,313,494	-				-0.7
3,313,494	-				-0.5
3,313,494	-				-0.8
3,313,498	+				+0.4
3,313,510	+				-0.6
3,313,510	+				-0.3
3,313,511	-				-1.0
3,313,511	-				+2.2
3,313,512	+				+0.4
3,313,512	+				-0.3
3,313,553	-				+0.4
3,313,578	+				+0.2
3,313,578	+				-0.2
3,313,579	-				-0.4
3,313,584	-				-0.6
3,313,661	-				+0.1
3,313,669	+				-0.3
3,313,670	-				+3.9
3,313,670	-				-1.9
3,313,771	+		BPHYT_RS14535	0.14	-1.8
3,313,921	+		BPHYT_RS14535	0.26	-2.1
3,313,999	+		BPHYT_RS14535	0.33	-2.8
3,314,000	-		BPHYT_RS14535	0.33	-0.4
3,314,000	-		BPHYT_RS14535	0.33	-1.3
3,314,036	-		BPHYT_RS14535	0.36	-3.0
3,314,099	-		BPHYT_RS14535	0.41	-0.3
3,314,099	-		BPHYT_RS14535	0.41	-2.1
3,314,197	+		BPHYT_RS14535	0.49	-1.4
3,314,300	-		BPHYT_RS14535	0.58	-1.1
3,314,383	+		BPHYT_RS14535	0.65	-0.5
3,314,384	-		BPHYT_RS14535	0.65	-0.3
3,314,402	+				-0.5
3,314,403	-		BPHYT_RS14535	0.66	-1.3
3,314,403	-		BPHYT_RS14535	0.66	-0.5
3,314,460	-		BPHYT_RS14535	0.71	+0.9
3,314,460	-		BPHYT_RS14535	0.71	-1.3
3,314,460	-		BPHYT_RS14535	0.71	+2.2
3,314,531	-		BPHYT_RS14535	0.77	-1.9
3,314,531	-		BPHYT_RS14535	0.77	-3.7
3,314,602	+		BPHYT_RS14535	0.83	-1.2
3,314,602	+		BPHYT_RS14535	0.83	-2.5
3,314,671	+		BPHYT_RS14535	0.89	-1.5
3,314,677	-		BPHYT_RS14535	0.89	-2.1
3,314,696	+				-0.9
3,314,697	-				-1.3
3,314,714	-				-2.6
3,314,770	+				+3.7
3,314,795	+				-1.0
3,314,799	-				-1.9
3,314,799	-				+0.6
3,314,799	-				+0.4
3,314,988	+				+0.3
3,314,989	-				+0.7
3,314,989	-				-0.6
3,315,002	+				+0.2
3,315,005	-				+0.2
3,315,048	+				-0.1
3,315,048	+				-0.5
3,315,048	+				-0.8
3,315,049	-				+0.7
3,315,049	-				-0.0
3,315,660	+				+2.3
3,315,676	+				+0.6
3,315,676	+				-0.0
3,315,680	+				-0.1
3,315,691	+				-0.8
3,315,743	-		BPHYT_RS14550	0.57	+1.0