Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14105

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Deoxyribonucleic from herring sperm 10 mg/mL (C)
3,218,833	+				+0.1
3,218,834	-				-0.3
3,218,836	+				-0.3
3,218,836	+				+0.3
3,218,836	+				-1.0
3,218,836	+				+0.1
3,218,837	-				+0.7
3,219,112	+		BPHYT_RS14100	0.28	-3.0
3,219,113	-		BPHYT_RS14100	0.28	-0.8
3,219,166	+		BPHYT_RS14100	0.35	+0.4
3,219,198	+		BPHYT_RS14100	0.39	+0.4
3,219,211	+		BPHYT_RS14100	0.40	-0.1
3,219,211	+		BPHYT_RS14100	0.40	+1.3
3,219,211	+		BPHYT_RS14100	0.40	-0.3
3,219,346	+		BPHYT_RS14100	0.57	-0.3
3,219,346	+		BPHYT_RS14100	0.57	+0.0
3,219,346	+		BPHYT_RS14100	0.57	+1.3
3,219,347	-		BPHYT_RS14100	0.57	-0.4
3,219,365	-		BPHYT_RS14100	0.59	-0.9
3,219,469	+		BPHYT_RS14100	0.72	-0.6
3,219,470	-		BPHYT_RS14100	0.72	+1.8
3,219,486	+		BPHYT_RS14100	0.74	+1.7
3,219,487	-		BPHYT_RS14100	0.74	-0.3
3,219,553	+		BPHYT_RS14100	0.82	-0.2
3,219,554	-		BPHYT_RS14100	0.82	-1.3
3,219,609	+		BPHYT_RS14100	0.89	+0.2
3,219,659	-				-0.1
3,219,830	-				-0.9
3,219,889	+				+0.2
3,219,890	-				-1.3
3,219,890	-				-1.4
3,219,908	+				-0.8
3,219,940	+				-0.9
3,219,940	+				-0.6
3,220,160	-		BPHYT_RS14105	0.21	-0.6
3,220,177	+		BPHYT_RS14105	0.22	-0.8
3,220,178	-		BPHYT_RS14105	0.22	-1.6
3,220,184	+		BPHYT_RS14105	0.23	-0.7
3,220,285	+		BPHYT_RS14105	0.29	-0.8
3,220,286	-		BPHYT_RS14105	0.29	-1.2
3,220,286	-		BPHYT_RS14105	0.29	+1.3
3,220,339	+		BPHYT_RS14105	0.32	-0.4
3,220,376	+		BPHYT_RS14105	0.34	-1.1
3,220,398	+		BPHYT_RS14105	0.36	-1.5
3,220,399	-		BPHYT_RS14105	0.36	-1.1
3,220,399	-		BPHYT_RS14105	0.36	-0.2
3,220,408	+		BPHYT_RS14105	0.36	-1.4
3,220,408	+		BPHYT_RS14105	0.36	-0.9
3,220,408	+		BPHYT_RS14105	0.36	-0.8
3,220,409	-		BPHYT_RS14105	0.36	-1.4
3,220,409	-		BPHYT_RS14105	0.36	-1.2
3,220,410	+		BPHYT_RS14105	0.36	-0.4
3,220,411	-		BPHYT_RS14105	0.36	-0.7
3,220,411	-		BPHYT_RS14105	0.36	-1.8
3,220,443	-		BPHYT_RS14105	0.38	-2.3
3,220,451	-		BPHYT_RS14105	0.39	-1.6
3,220,536	+		BPHYT_RS14105	0.44	-1.8
3,220,774	+		BPHYT_RS14105	0.59	-1.3
3,220,812	-		BPHYT_RS14105	0.61	-0.8
3,220,831	+		BPHYT_RS14105	0.62	-1.6
3,220,831	+		BPHYT_RS14105	0.62	-2.2
3,220,831	+		BPHYT_RS14105	0.62	-1.8
3,220,832	-		BPHYT_RS14105	0.62	-0.0
3,220,832	-		BPHYT_RS14105	0.62	-0.6
3,220,832	-		BPHYT_RS14105	0.62	-0.4
3,220,859	-		BPHYT_RS14105	0.64	-1.0
3,220,859	-		BPHYT_RS14105	0.64	-1.7
3,220,954	+		BPHYT_RS14105	0.70	-0.7
3,220,954	+		BPHYT_RS14105	0.70	-0.8
3,220,955	-		BPHYT_RS14105	0.70	+1.0
3,221,060	+		BPHYT_RS14105	0.76	-2.1
3,221,061	-		BPHYT_RS14105	0.76	-2.2
3,221,061	-		BPHYT_RS14105	0.76	-2.0
3,221,224	+		BPHYT_RS14105	0.86	-1.6
3,221,224	+		BPHYT_RS14105	0.86	-3.1
3,221,224	+		BPHYT_RS14105	0.86	-2.0
3,221,225	-		BPHYT_RS14105	0.86	-1.6
3,221,225	-		BPHYT_RS14105	0.86	-1.2
3,221,318	+				-1.4
3,221,318	+				-2.8
3,221,318	+				-2.5
3,221,319	-				-0.2
3,221,319	-				-0.3
3,221,453	+				-0.1
3,221,453	+				-0.0
3,221,454	-				+0.3
3,221,526	-				-2.5
3,221,577	-				+0.4
3,221,577	-				+0.1
3,221,590	+				-0.7
3,221,591	-				+2.2
3,221,591	-				+0.7
3,221,591	-				-0.3
3,221,591	-				+0.7
3,221,670	+				+1.8
3,221,885	+		BPHYT_RS14110	0.11	+0.5
3,221,886	-		BPHYT_RS14110	0.11	-2.3
3,221,931	-				+2.9
3,222,035	+		BPHYT_RS14110	0.19	-0.1
3,222,036	-		BPHYT_RS14110	0.19	-0.2
3,222,306	+		BPHYT_RS14110	0.32	+0.4
3,222,306	+		BPHYT_RS14110	0.32	+1.1