Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08840

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08835 and BPHYT_RS08840 are separated by 306 nucleotidesBPHYT_RS08840 and BPHYT_RS08845 are separated by 145 nucleotidesBPHYT_RS08845 and BPHYT_RS08850 overlap by 11 nucleotides BPHYT_RS08835: BPHYT_RS08835 - glyoxylate carboligase, at 2,001,768 to 2,003,543 _RS08835 BPHYT_RS08840: BPHYT_RS08840 - LysR family transcriptional regulator, at 2,003,850 to 2,004,764 _RS08840 BPHYT_RS08845: BPHYT_RS08845 - RNA polymerase sigma factor, at 2,004,910 to 2,005,644 _RS08845 BPHYT_RS08850: BPHYT_RS08850 - transcriptional regulator, at 2,005,634 to 2,006,569 _RS08850 Position (kb) 2003 2004 2005Strain fitness (log2 ratio) -1 0 1 2at 2002.941 kb on - strand, within BPHYT_RS08835at 2002.994 kb on - strand, within BPHYT_RS08835at 2003.011 kb on + strand, within BPHYT_RS08835at 2003.215 kb on + strand, within BPHYT_RS08835at 2003.256 kb on - strand, within BPHYT_RS08835at 2003.256 kb on - strand, within BPHYT_RS08835at 2003.281 kb on + strand, within BPHYT_RS08835at 2003.282 kb on - strand, within BPHYT_RS08835at 2003.282 kb on - strand, within BPHYT_RS08835at 2003.282 kb on - strand, within BPHYT_RS08835at 2003.327 kb on + strand, within BPHYT_RS08835at 2003.363 kb on - strand, within BPHYT_RS08835at 2003.363 kb on - strand, within BPHYT_RS08835at 2003.579 kb on - strandat 2003.808 kb on + strandat 2003.808 kb on + strandat 2004.360 kb on + strand, within BPHYT_RS08840at 2004.456 kb on + strand, within BPHYT_RS08840at 2004.457 kb on - strand, within BPHYT_RS08840at 2004.646 kb on - strand, within BPHYT_RS08840at 2004.700 kb on - strandat 2004.700 kb on - strandat 2004.726 kb on + strandat 2005.013 kb on - strand, within BPHYT_RS08845at 2005.159 kb on + strand, within BPHYT_RS08845at 2005.642 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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2,002,941 - BPHYT_RS08835 0.66 +0.9
2,002,994 - BPHYT_RS08835 0.69 +0.6
2,003,011 + BPHYT_RS08835 0.70 -1.3
2,003,215 + BPHYT_RS08835 0.81 -0.2
2,003,256 - BPHYT_RS08835 0.84 -0.7
2,003,256 - BPHYT_RS08835 0.84 +0.6
2,003,281 + BPHYT_RS08835 0.85 +0.5
2,003,282 - BPHYT_RS08835 0.85 +1.0
2,003,282 - BPHYT_RS08835 0.85 +0.8
2,003,282 - BPHYT_RS08835 0.85 +1.7
2,003,327 + BPHYT_RS08835 0.88 +0.4
2,003,363 - BPHYT_RS08835 0.90 +0.5
2,003,363 - BPHYT_RS08835 0.90 +0.2
2,003,579 - +0.2
2,003,808 + -1.4
2,003,808 + +0.4
2,004,360 + BPHYT_RS08840 0.56 +0.0
2,004,456 + BPHYT_RS08840 0.66 +1.1
2,004,457 - BPHYT_RS08840 0.66 +0.3
2,004,646 - BPHYT_RS08840 0.87 +1.8
2,004,700 - -0.2
2,004,700 - +0.1
2,004,726 + +0.2
2,005,013 - BPHYT_RS08845 0.14 +0.7
2,005,159 + BPHYT_RS08845 0.34 +0.1
2,005,642 + -0.2

Or see this region's nucleotide sequence