Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08840
Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Deoxyribonucleic from herring sperm 10 mg/mL (C) |
---|---|---|---|---|---|
remove | |||||
2,002,941 | - | BPHYT_RS08835 | 0.66 | +0.9 | |
2,002,994 | - | BPHYT_RS08835 | 0.69 | +0.6 | |
2,003,011 | + | BPHYT_RS08835 | 0.70 | -1.3 | |
2,003,215 | + | BPHYT_RS08835 | 0.81 | -0.2 | |
2,003,256 | - | BPHYT_RS08835 | 0.84 | -0.7 | |
2,003,256 | - | BPHYT_RS08835 | 0.84 | +0.6 | |
2,003,281 | + | BPHYT_RS08835 | 0.85 | +0.5 | |
2,003,282 | - | BPHYT_RS08835 | 0.85 | +1.0 | |
2,003,282 | - | BPHYT_RS08835 | 0.85 | +0.8 | |
2,003,282 | - | BPHYT_RS08835 | 0.85 | +1.7 | |
2,003,327 | + | BPHYT_RS08835 | 0.88 | +0.4 | |
2,003,363 | - | BPHYT_RS08835 | 0.90 | +0.5 | |
2,003,363 | - | BPHYT_RS08835 | 0.90 | +0.2 | |
2,003,579 | - | +0.2 | |||
2,003,808 | + | -1.4 | |||
2,003,808 | + | +0.4 | |||
2,004,360 | + | BPHYT_RS08840 | 0.56 | +0.0 | |
2,004,456 | + | BPHYT_RS08840 | 0.66 | +1.1 | |
2,004,457 | - | BPHYT_RS08840 | 0.66 | +0.3 | |
2,004,646 | - | BPHYT_RS08840 | 0.87 | +1.8 | |
2,004,700 | - | -0.2 | |||
2,004,700 | - | +0.1 | |||
2,004,726 | + | +0.2 | |||
2,005,013 | - | BPHYT_RS08845 | 0.14 | +0.7 | |
2,005,159 | + | BPHYT_RS08845 | 0.34 | +0.1 | |
2,005,642 | + | -0.2 |
Or see this region's nucleotide sequence