Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07920

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07915 and BPHYT_RS07920 are separated by 3 nucleotidesBPHYT_RS07920 and BPHYT_RS07925 are separated by 142 nucleotides BPHYT_RS07915: BPHYT_RS07915 - histidine kinase, at 1,802,178 to 1,803,926 _RS07915 BPHYT_RS07920: BPHYT_RS07920 - hypothetical protein, at 1,803,930 to 1,804,253 _RS07920 BPHYT_RS07925: BPHYT_RS07925 - glutamine amidotransferase, at 1,804,396 to 1,804,977 _RS07925 Position (kb) 1803 1804 1805Strain fitness (log2 ratio) -1 0 1at 1803.042 kb on + strand, within BPHYT_RS07915at 1803.042 kb on + strand, within BPHYT_RS07915at 1803.216 kb on + strand, within BPHYT_RS07915at 1803.469 kb on - strand, within BPHYT_RS07915at 1803.735 kb on + strand, within BPHYT_RS07915at 1803.736 kb on - strand, within BPHYT_RS07915at 1803.985 kb on + strand, within BPHYT_RS07920at 1804.269 kb on - strandat 1804.287 kb on - strandat 1804.697 kb on + strand, within BPHYT_RS07925at 1805.044 kb on + strandat 1805.045 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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1,803,042 + BPHYT_RS07915 0.49 +0.1
1,803,042 + BPHYT_RS07915 0.49 +0.5
1,803,216 + BPHYT_RS07915 0.59 +0.4
1,803,469 - BPHYT_RS07915 0.74 +1.1
1,803,735 + BPHYT_RS07915 0.89 +0.2
1,803,736 - BPHYT_RS07915 0.89 -1.4
1,803,985 + BPHYT_RS07920 0.17 -1.0
1,804,269 - +0.2
1,804,287 - -0.6
1,804,697 + BPHYT_RS07925 0.52 -0.4
1,805,044 + +0.4
1,805,045 - +0.5

Or see this region's nucleotide sequence