Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02230 and BPHYT_RS02235 overlap by 8 nucleotides BPHYT_RS02235 and BPHYT_RS02240 are separated by 94 nucleotides BPHYT_RS02240 and BPHYT_RS02245 are separated by 85 nucleotides BPHYT_RS02245 and BPHYT_RS02250 are separated by 187 nucleotides
BPHYT_RS02230: BPHYT_RS02230 - acetyl-CoA acetyltransferase, at 512,101 to 513,294
_RS02230
BPHYT_RS02235: BPHYT_RS02235 - beta carbonic anhydrase, at 513,287 to 514,063
_RS02235
BPHYT_RS02240: BPHYT_RS02240 - isocitrate dehydrogenase kinase/phosphatase, at 514,158 to 515,996
_RS02240
BPHYT_RS02245: BPHYT_RS02245 - MerR family transcriptional regulator, at 516,082 to 516,486
_RS02245
BPHYT_RS02250: BPHYT_RS02250 - Zn-dependent hydrolase, at 516,674 to 517,747
_RS02250
Position (kb) 514
515
516 Strain fitness (log2 ratio) -2
-1
0
1 at 513.424 kb on - strand, within BPHYT_RS02235 at 513.496 kb on - strand, within BPHYT_RS02235 at 513.554 kb on - strand, within BPHYT_RS02235 at 513.564 kb on - strand, within BPHYT_RS02235 at 514.113 kb on + strand at 514.114 kb on - strand at 514.114 kb on - strand at 514.306 kb on - strand at 514.541 kb on - strand, within BPHYT_RS02240 at 514.541 kb on - strand, within BPHYT_RS02240 at 514.582 kb on + strand, within BPHYT_RS02240 at 514.720 kb on + strand, within BPHYT_RS02240 at 514.721 kb on - strand, within BPHYT_RS02240 at 514.721 kb on - strand, within BPHYT_RS02240 at 514.721 kb on - strand, within BPHYT_RS02240 at 514.891 kb on + strand, within BPHYT_RS02240 at 514.891 kb on + strand, within BPHYT_RS02240 at 514.892 kb on - strand, within BPHYT_RS02240 at 514.964 kb on - strand, within BPHYT_RS02240 at 515.109 kb on - strand, within BPHYT_RS02240 at 515.111 kb on - strand, within BPHYT_RS02240 at 515.338 kb on + strand, within BPHYT_RS02240 at 515.356 kb on + strand, within BPHYT_RS02240 at 515.548 kb on + strand, within BPHYT_RS02240 at 515.584 kb on + strand, within BPHYT_RS02240 at 515.584 kb on + strand, within BPHYT_RS02240 at 515.585 kb on - strand, within BPHYT_RS02240 at 515.719 kb on + strand, within BPHYT_RS02240 at 515.720 kb on - strand, within BPHYT_RS02240 at 515.816 kb on - strand at 515.823 kb on - strand at 516.042 kb on - strand at 516.263 kb on + strand, within BPHYT_RS02245 at 516.330 kb on + strand, within BPHYT_RS02245 at 516.357 kb on - strand, within BPHYT_RS02245 at 516.400 kb on + strand, within BPHYT_RS02245 at 516.473 kb on + strand at 516.473 kb on + strand at 516.591 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 513,424 - BPHYT_RS02235 0.18 +0.7 513,496 - BPHYT_RS02235 0.27 +1.0 513,554 - BPHYT_RS02235 0.34 +1.3 513,564 - BPHYT_RS02235 0.36 -0.1 514,113 + +0.7 514,114 - -0.7 514,114 - -1.3 514,306 - -1.4 514,541 - BPHYT_RS02240 0.21 -1.9 514,541 - BPHYT_RS02240 0.21 -1.5 514,582 + BPHYT_RS02240 0.23 +0.5 514,720 + BPHYT_RS02240 0.31 +0.4 514,721 - BPHYT_RS02240 0.31 -0.9 514,721 - BPHYT_RS02240 0.31 -0.9 514,721 - BPHYT_RS02240 0.31 -2.5 514,891 + BPHYT_RS02240 0.40 +0.2 514,891 + BPHYT_RS02240 0.40 +0.1 514,892 - BPHYT_RS02240 0.40 -0.6 514,964 - BPHYT_RS02240 0.44 -1.5 515,109 - BPHYT_RS02240 0.52 -1.0 515,111 - BPHYT_RS02240 0.52 -0.4 515,338 + BPHYT_RS02240 0.64 -0.3 515,356 + BPHYT_RS02240 0.65 -0.6 515,548 + BPHYT_RS02240 0.76 +1.6 515,584 + BPHYT_RS02240 0.78 +0.4 515,584 + BPHYT_RS02240 0.78 +0.1 515,585 - BPHYT_RS02240 0.78 -0.8 515,719 + BPHYT_RS02240 0.85 +0.4 515,720 - BPHYT_RS02240 0.85 -0.3 515,816 - +0.3 515,823 - +0.8 516,042 - +0.3 516,263 + BPHYT_RS02245 0.45 -1.3 516,330 + BPHYT_RS02245 0.61 +0.2 516,357 - BPHYT_RS02245 0.68 -0.6 516,400 + BPHYT_RS02245 0.79 +0.8 516,473 + +1.2 516,473 + -0.5 516,591 + +0.3
Or see this region's nucleotide sequence