Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00495

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00490 and BPHYT_RS00495 are separated by 18 nucleotidesBPHYT_RS00495 and BPHYT_RS00500 are separated by 68 nucleotides BPHYT_RS00490: BPHYT_RS00490 - NADH dehydrogenase, at 119,410 to 120,729 _RS00490 BPHYT_RS00495: BPHYT_RS00495 - S-formylglutathione hydrolase, at 120,748 to 121,578 _RS00495 BPHYT_RS00500: BPHYT_RS00500 - hypothetical protein, at 121,647 to 122,987 _RS00500 Position (kb) 120 121 122Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 119.899 kb on - strand, within BPHYT_RS00490at 119.982 kb on - strand, within BPHYT_RS00490at 119.983 kb on + strand, within BPHYT_RS00490at 119.984 kb on - strand, within BPHYT_RS00490at 120.025 kb on + strand, within BPHYT_RS00490at 120.063 kb on + strand, within BPHYT_RS00490at 120.064 kb on - strand, within BPHYT_RS00490at 120.064 kb on - strand, within BPHYT_RS00490at 120.064 kb on - strand, within BPHYT_RS00490at 120.065 kb on + strand, within BPHYT_RS00490at 120.383 kb on + strand, within BPHYT_RS00490at 120.384 kb on - strand, within BPHYT_RS00490at 120.423 kb on - strand, within BPHYT_RS00490at 120.451 kb on - strand, within BPHYT_RS00490at 120.527 kb on + strand, within BPHYT_RS00490at 120.527 kb on + strand, within BPHYT_RS00490at 120.581 kb on + strand, within BPHYT_RS00490at 120.582 kb on - strand, within BPHYT_RS00490at 120.582 kb on - strand, within BPHYT_RS00490at 120.725 kb on - strandat 120.725 kb on - strandat 120.725 kb on - strandat 120.781 kb on - strandat 120.809 kb on + strandat 120.809 kb on + strandat 120.809 kb on + strandat 120.810 kb on - strandat 120.812 kb on + strandat 120.812 kb on + strandat 120.813 kb on - strandat 120.813 kb on - strandat 120.813 kb on - strandat 120.987 kb on - strand, within BPHYT_RS00495at 121.192 kb on + strand, within BPHYT_RS00495at 121.192 kb on + strand, within BPHYT_RS00495at 121.220 kb on + strand, within BPHYT_RS00495at 121.221 kb on - strand, within BPHYT_RS00495at 121.221 kb on - strand, within BPHYT_RS00495at 121.226 kb on + strand, within BPHYT_RS00495at 121.226 kb on + strand, within BPHYT_RS00495at 121.226 kb on + strand, within BPHYT_RS00495at 121.226 kb on + strand, within BPHYT_RS00495at 121.226 kb on + strand, within BPHYT_RS00495at 121.226 kb on + strand, within BPHYT_RS00495at 121.227 kb on - strand, within BPHYT_RS00495at 121.227 kb on - strand, within BPHYT_RS00495at 121.271 kb on + strand, within BPHYT_RS00495at 121.298 kb on + strand, within BPHYT_RS00495at 121.416 kb on + strand, within BPHYT_RS00495at 121.439 kb on + strand, within BPHYT_RS00495at 121.529 kb on + strandat 121.529 kb on + strandat 121.589 kb on + strandat 121.822 kb on + strand, within BPHYT_RS00500at 121.825 kb on + strand, within BPHYT_RS00500at 121.826 kb on - strand, within BPHYT_RS00500at 122.125 kb on + strand, within BPHYT_RS00500at 122.126 kb on - strand, within BPHYT_RS00500at 122.126 kb on - strandat 122.246 kb on + strand, within BPHYT_RS00500at 122.247 kb on - strand, within BPHYT_RS00500at 122.247 kb on - strand, within BPHYT_RS00500at 122.247 kb on - strand, within BPHYT_RS00500at 122.247 kb on - strand, within BPHYT_RS00500at 122.423 kb on + strand, within BPHYT_RS00500

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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119,899 - BPHYT_RS00490 0.37 +2.5
119,982 - BPHYT_RS00490 0.43 -0.2
119,983 + BPHYT_RS00490 0.43 -0.5
119,984 - BPHYT_RS00490 0.43 +0.2
120,025 + BPHYT_RS00490 0.47 +1.5
120,063 + BPHYT_RS00490 0.49 +0.1
120,064 - BPHYT_RS00490 0.50 -1.6
120,064 - BPHYT_RS00490 0.50 +0.5
120,064 - BPHYT_RS00490 0.50 +0.5
120,065 + BPHYT_RS00490 0.50 +0.0
120,383 + BPHYT_RS00490 0.74 -1.4
120,384 - BPHYT_RS00490 0.74 -1.4
120,423 - BPHYT_RS00490 0.77 +0.3
120,451 - BPHYT_RS00490 0.79 +1.1
120,527 + BPHYT_RS00490 0.85 -0.7
120,527 + BPHYT_RS00490 0.85 +0.5
120,581 + BPHYT_RS00490 0.89 -1.1
120,582 - BPHYT_RS00490 0.89 -1.3
120,582 - BPHYT_RS00490 0.89 +1.1
120,725 - -0.2
120,725 - +0.8
120,725 - -4.0
120,781 - +2.3
120,809 + -0.1
120,809 + +0.0
120,809 + -0.3
120,810 - -1.2
120,812 + -0.1
120,812 + +2.3
120,813 - +1.3
120,813 - -0.1
120,813 - -0.3
120,987 - BPHYT_RS00495 0.29 -0.7
121,192 + BPHYT_RS00495 0.53 -0.5
121,192 + BPHYT_RS00495 0.53 +0.5
121,220 + BPHYT_RS00495 0.57 +0.1
121,221 - BPHYT_RS00495 0.57 -0.1
121,221 - BPHYT_RS00495 0.57 -1.8
121,226 + BPHYT_RS00495 0.58 -0.0
121,226 + BPHYT_RS00495 0.58 -2.0
121,226 + BPHYT_RS00495 0.58 -0.3
121,226 + BPHYT_RS00495 0.58 +0.2
121,226 + BPHYT_RS00495 0.58 +1.3
121,226 + BPHYT_RS00495 0.58 -2.4
121,227 - BPHYT_RS00495 0.58 +0.7
121,227 - BPHYT_RS00495 0.58 -1.1
121,271 + BPHYT_RS00495 0.63 +0.6
121,298 + BPHYT_RS00495 0.66 -0.4
121,416 + BPHYT_RS00495 0.80 +0.6
121,439 + BPHYT_RS00495 0.83 -0.5
121,529 + -2.3
121,529 + +0.7
121,589 + +1.0
121,822 + BPHYT_RS00500 0.13 -0.0
121,825 + BPHYT_RS00500 0.13 -1.2
121,826 - BPHYT_RS00500 0.13 +1.5
122,125 + BPHYT_RS00500 0.36 +0.2
122,126 - BPHYT_RS00500 0.36 -0.6
122,126 - +2.7
122,246 + BPHYT_RS00500 0.45 +0.7
122,247 - BPHYT_RS00500 0.45 +1.5
122,247 - BPHYT_RS00500 0.45 +0.2
122,247 - BPHYT_RS00500 0.45 +0.5
122,247 - BPHYT_RS00500 0.45 -0.8
122,423 + BPHYT_RS00500 0.58 -2.0

Or see this region's nucleotide sequence