Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_003873 and ABIE53_003874 are separated by 101 nucleotides ABIE53_003874 and ABIE53_003875 are separated by 610 nucleotides
ABIE53_003873: ABIE53_003873 - 2-aminoethylphosphonate transport system ATP-binding protein, at 11,967 to 13,067
_003873
ABIE53_003874: ABIE53_003874 - 2-aminoethylphosphonate transport system substrate-binding protein, at 13,169 to 14,257
_003874
ABIE53_003875: ABIE53_003875 - DeoR family glycerol-3-phosphate regulon repressor, at 14,868 to 15,623
_003875
Position (kb) 13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 12.221 kb on + strand, within ABIE53_003873 at 12.221 kb on + strand, within ABIE53_003873 at 12.221 kb on + strand, within ABIE53_003873 at 12.316 kb on + strand, within ABIE53_003873 at 12.317 kb on - strand, within ABIE53_003873 at 12.317 kb on - strand, within ABIE53_003873 at 12.317 kb on - strand, within ABIE53_003873 at 12.317 kb on - strand, within ABIE53_003873 at 12.317 kb on - strand, within ABIE53_003873 at 12.317 kb on - strand, within ABIE53_003873 at 12.317 kb on - strand, within ABIE53_003873 at 12.317 kb on - strand, within ABIE53_003873 at 12.318 kb on + strand, within ABIE53_003873 at 12.318 kb on + strand, within ABIE53_003873 at 12.318 kb on + strand, within ABIE53_003873 at 12.318 kb on + strand, within ABIE53_003873 at 12.318 kb on + strand, within ABIE53_003873 at 12.318 kb on + strand, within ABIE53_003873 at 12.319 kb on - strand, within ABIE53_003873 at 12.319 kb on - strand, within ABIE53_003873 at 12.319 kb on - strand, within ABIE53_003873 at 12.319 kb on - strand, within ABIE53_003873 at 12.733 kb on + strand, within ABIE53_003873 at 12.733 kb on + strand, within ABIE53_003873 at 12.733 kb on + strand, within ABIE53_003873 at 12.733 kb on + strand, within ABIE53_003873 at 12.733 kb on + strand, within ABIE53_003873 at 12.733 kb on + strand, within ABIE53_003873 at 12.733 kb on + strand, within ABIE53_003873 at 12.734 kb on - strand, within ABIE53_003873 at 12.734 kb on - strand, within ABIE53_003873 at 12.734 kb on - strand, within ABIE53_003873 at 12.764 kb on + strand, within ABIE53_003873 at 12.774 kb on + strand, within ABIE53_003873 at 12.774 kb on + strand, within ABIE53_003873 at 12.774 kb on + strand, within ABIE53_003873 at 12.775 kb on - strand, within ABIE53_003873 at 13.061 kb on + strand at 13.152 kb on + strand at 13.152 kb on + strand at 13.153 kb on - strand at 13.153 kb on - strand at 13.159 kb on + strand at 13.160 kb on - strand at 13.160 kb on - strand at 13.160 kb on - strand at 13.170 kb on + strand at 13.170 kb on + strand at 13.171 kb on - strand at 13.407 kb on + strand, within ABIE53_003874 at 13.408 kb on - strand, within ABIE53_003874 at 13.408 kb on - strand, within ABIE53_003874 at 13.620 kb on + strand, within ABIE53_003874 at 13.620 kb on + strand, within ABIE53_003874 at 13.620 kb on + strand, within ABIE53_003874 at 13.671 kb on + strand, within ABIE53_003874 at 13.671 kb on + strand, within ABIE53_003874 at 13.671 kb on + strand, within ABIE53_003874 at 13.671 kb on + strand, within ABIE53_003874 at 13.672 kb on - strand, within ABIE53_003874 at 13.756 kb on - strand, within ABIE53_003874 at 13.773 kb on + strand, within ABIE53_003874 at 13.773 kb on + strand, within ABIE53_003874 at 13.774 kb on - strand, within ABIE53_003874 at 13.848 kb on + strand, within ABIE53_003874 at 13.848 kb on + strand, within ABIE53_003874 at 13.848 kb on + strand, within ABIE53_003874 at 13.848 kb on + strand, within ABIE53_003874 at 13.848 kb on + strand, within ABIE53_003874 at 13.848 kb on + strand, within ABIE53_003874 at 13.848 kb on + strand, within ABIE53_003874 at 13.849 kb on - strand, within ABIE53_003874 at 13.849 kb on - strand, within ABIE53_003874 at 13.849 kb on - strand, within ABIE53_003874 at 13.849 kb on - strand, within ABIE53_003874 at 13.849 kb on - strand, within ABIE53_003874 at 13.849 kb on - strand, within ABIE53_003874 at 13.849 kb on - strand, within ABIE53_003874 at 13.849 kb on - strand, within ABIE53_003874 at 13.911 kb on + strand, within ABIE53_003874 at 13.911 kb on + strand, within ABIE53_003874 at 13.912 kb on - strand, within ABIE53_003874 at 13.912 kb on - strand, within ABIE53_003874 at 13.926 kb on + strand, within ABIE53_003874 at 13.926 kb on + strand, within ABIE53_003874 at 13.927 kb on - strand, within ABIE53_003874 at 13.927 kb on - strand, within ABIE53_003874 at 14.096 kb on + strand, within ABIE53_003874 at 14.096 kb on + strand, within ABIE53_003874 at 14.096 kb on + strand, within ABIE53_003874 at 14.096 kb on + strand, within ABIE53_003874 at 14.096 kb on + strand, within ABIE53_003874 at 14.096 kb on + strand, within ABIE53_003874 at 14.096 kb on + strand, within ABIE53_003874 at 14.097 kb on - strand, within ABIE53_003874 at 14.106 kb on + strand, within ABIE53_003874 at 14.107 kb on - strand, within ABIE53_003874 at 14.133 kb on + strand, within ABIE53_003874 at 14.133 kb on + strand, within ABIE53_003874 at 14.133 kb on + strand, within ABIE53_003874 at 14.133 kb on + strand, within ABIE53_003874 at 14.134 kb on - strand, within ABIE53_003874 at 14.165 kb on + strand at 14.166 kb on - strand at 14.277 kb on + strand at 14.277 kb on + strand at 14.278 kb on - strand at 14.278 kb on - strand at 14.305 kb on - strand at 14.305 kb on - strand at 14.350 kb on + strand at 14.350 kb on + strand at 14.350 kb on + strand at 14.351 kb on - strand at 14.544 kb on + strand at 14.544 kb on + strand at 14.545 kb on - strand at 14.545 kb on - strand at 14.545 kb on - strand at 14.545 kb on - strand at 14.545 kb on - strand at 14.545 kb on - strand at 14.554 kb on + strand at 14.555 kb on - strand at 14.555 kb on - strand at 14.555 kb on - strand at 14.825 kb on + strand at 14.947 kb on + strand, within ABIE53_003875 at 14.947 kb on + strand, within ABIE53_003875 at 14.948 kb on - strand, within ABIE53_003875 at 14.948 kb on - strand, within ABIE53_003875 at 14.948 kb on - strand, within ABIE53_003875 at 15.076 kb on + strand, within ABIE53_003875 at 15.076 kb on + strand, within ABIE53_003875 at 15.076 kb on + strand, within ABIE53_003875 at 15.076 kb on + strand, within ABIE53_003875 at 15.077 kb on - strand, within ABIE53_003875 at 15.088 kb on + strand, within ABIE53_003875 at 15.088 kb on + strand, within ABIE53_003875 at 15.089 kb on - strand, within ABIE53_003875 at 15.139 kb on + strand, within ABIE53_003875 at 15.139 kb on + strand, within ABIE53_003875 at 15.139 kb on + strand, within ABIE53_003875 at 15.139 kb on + strand, within ABIE53_003875 at 15.140 kb on - strand, within ABIE53_003875
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days remove 12,221 + ABIE53_003873 0.23 -2.4 12,221 + ABIE53_003873 0.23 -0.5 12,221 + ABIE53_003873 0.23 +2.3 12,316 + ABIE53_003873 0.32 -0.9 12,317 - ABIE53_003873 0.32 -1.6 12,317 - ABIE53_003873 0.32 -1.5 12,317 - ABIE53_003873 0.32 -1.4 12,317 - ABIE53_003873 0.32 -0.5 12,317 - ABIE53_003873 0.32 -0.3 12,317 - ABIE53_003873 0.32 -0.6 12,317 - ABIE53_003873 0.32 -0.8 12,317 - ABIE53_003873 0.32 -0.2 12,318 + ABIE53_003873 0.32 -1.2 12,318 + ABIE53_003873 0.32 +0.3 12,318 + ABIE53_003873 0.32 -1.4 12,318 + ABIE53_003873 0.32 +1.9 12,318 + ABIE53_003873 0.32 +0.8 12,318 + ABIE53_003873 0.32 -0.8 12,319 - ABIE53_003873 0.32 -2.1 12,319 - ABIE53_003873 0.32 -2.5 12,319 - ABIE53_003873 0.32 -3.3 12,319 - ABIE53_003873 0.32 -0.2 12,733 + ABIE53_003873 0.70 +1.2 12,733 + ABIE53_003873 0.70 -0.9 12,733 + ABIE53_003873 0.70 +2.3 12,733 + ABIE53_003873 0.70 -0.8 12,733 + ABIE53_003873 0.70 +0.5 12,733 + ABIE53_003873 0.70 -0.8 12,733 + ABIE53_003873 0.70 -0.5 12,734 - ABIE53_003873 0.70 +0.5 12,734 - ABIE53_003873 0.70 +0.3 12,734 - ABIE53_003873 0.70 -1.8 12,764 + ABIE53_003873 0.72 -1.1 12,774 + ABIE53_003873 0.73 -1.0 12,774 + ABIE53_003873 0.73 -1.7 12,774 + ABIE53_003873 0.73 -0.1 12,775 - ABIE53_003873 0.73 +0.3 13,061 + +0.4 13,152 + -1.4 13,152 + +0.3 13,153 - -1.3 13,153 - -1.7 13,159 + -0.8 13,160 - +1.8 13,160 - -1.1 13,160 - +2.2 13,170 + -1.0 13,170 + -1.1 13,171 - -0.2 13,407 + ABIE53_003874 0.22 +0.0 13,408 - ABIE53_003874 0.22 -0.7 13,408 - ABIE53_003874 0.22 -0.5 13,620 + ABIE53_003874 0.41 -0.8 13,620 + ABIE53_003874 0.41 -1.2 13,620 + ABIE53_003874 0.41 +1.8 13,671 + ABIE53_003874 0.46 -0.5 13,671 + ABIE53_003874 0.46 -2.4 13,671 + ABIE53_003874 0.46 +1.6 13,671 + ABIE53_003874 0.46 -0.3 13,672 - ABIE53_003874 0.46 -0.3 13,756 - ABIE53_003874 0.54 -0.2 13,773 + ABIE53_003874 0.55 +1.0 13,773 + ABIE53_003874 0.55 -3.4 13,774 - ABIE53_003874 0.56 -1.3 13,848 + ABIE53_003874 0.62 +0.3 13,848 + ABIE53_003874 0.62 -0.3 13,848 + ABIE53_003874 0.62 +0.6 13,848 + ABIE53_003874 0.62 +0.3 13,848 + ABIE53_003874 0.62 -0.9 13,848 + ABIE53_003874 0.62 -1.7 13,848 + ABIE53_003874 0.62 +0.4 13,849 - ABIE53_003874 0.62 -1.1 13,849 - ABIE53_003874 0.62 -2.9 13,849 - ABIE53_003874 0.62 -1.8 13,849 - ABIE53_003874 0.62 -1.8 13,849 - ABIE53_003874 0.62 +0.9 13,849 - ABIE53_003874 0.62 +1.8 13,849 - ABIE53_003874 0.62 -1.2 13,849 - ABIE53_003874 0.62 +0.5 13,911 + ABIE53_003874 0.68 -0.5 13,911 + ABIE53_003874 0.68 +0.4 13,912 - ABIE53_003874 0.68 -1.4 13,912 - ABIE53_003874 0.68 +1.2 13,926 + ABIE53_003874 0.70 -0.2 13,926 + ABIE53_003874 0.70 -0.8 13,927 - ABIE53_003874 0.70 +1.0 13,927 - ABIE53_003874 0.70 -0.8 14,096 + ABIE53_003874 0.85 -1.4 14,096 + ABIE53_003874 0.85 +0.0 14,096 + ABIE53_003874 0.85 -1.5 14,096 + ABIE53_003874 0.85 -1.7 14,096 + ABIE53_003874 0.85 +6.2 14,096 + ABIE53_003874 0.85 +1.3 14,096 + ABIE53_003874 0.85 -0.2 14,097 - ABIE53_003874 0.85 +0.0 14,106 + ABIE53_003874 0.86 -0.1 14,107 - ABIE53_003874 0.86 -1.4 14,133 + ABIE53_003874 0.89 -0.7 14,133 + ABIE53_003874 0.89 +0.9 14,133 + ABIE53_003874 0.89 -1.7 14,133 + ABIE53_003874 0.89 -1.3 14,134 - ABIE53_003874 0.89 +0.3 14,165 + -2.0 14,166 - -2.2 14,277 + +2.0 14,277 + +0.8 14,278 - -0.1 14,278 - +1.2 14,305 - -0.2 14,305 - +0.3 14,350 + -1.0 14,350 + +0.8 14,350 + -0.5 14,351 - -1.8 14,544 + -3.5 14,544 + -0.5 14,545 - +0.0 14,545 - +1.8 14,545 - -0.8 14,545 - +0.3 14,545 - +1.8 14,545 - +0.3 14,554 + -0.2 14,555 - -1.4 14,555 - -1.7 14,555 - +3.0 14,825 + -1.1 14,947 + ABIE53_003875 0.10 -0.7 14,947 + ABIE53_003875 0.10 +0.8 14,948 - ABIE53_003875 0.11 +1.2 14,948 - ABIE53_003875 0.11 +0.0 14,948 - ABIE53_003875 0.11 +1.3 15,076 + ABIE53_003875 0.28 +1.1 15,076 + ABIE53_003875 0.28 +0.3 15,076 + ABIE53_003875 0.28 +0.3 15,076 + ABIE53_003875 0.28 -2.8 15,077 - ABIE53_003875 0.28 +1.7 15,088 + ABIE53_003875 0.29 +1.9 15,088 + ABIE53_003875 0.29 -0.5 15,089 - ABIE53_003875 0.29 +0.3 15,139 + ABIE53_003875 0.36 -0.8 15,139 + ABIE53_003875 0.36 +2.6 15,139 + ABIE53_003875 0.36 +0.0 15,139 + ABIE53_003875 0.36 -1.5 15,140 - ABIE53_003875 0.36 +0.8
Or see this region's nucleotide sequence