Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003594

Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
4,034,466	+		ABIE53_003593	0.49	+2.5
4,034,466	+		ABIE53_003593	0.49	-2.1
4,034,466	+		ABIE53_003593	0.49	+0.5
4,034,466	+		ABIE53_003593	0.49	-0.5
4,034,466	+		ABIE53_003593	0.49	-0.7
4,034,466	+		ABIE53_003593	0.49	+0.2
4,034,467	-		ABIE53_003593	0.49	-2.1
4,034,467	-		ABIE53_003593	0.49	+3.7
4,034,467	-		ABIE53_003593	0.49	+0.9
4,034,593	+		ABIE53_003593	0.58	+0.2
4,034,593	+		ABIE53_003593	0.58	+0.1
4,034,593	+		ABIE53_003593	0.58	+0.2
4,034,593	+		ABIE53_003593	0.58	-2.4
4,034,593	+		ABIE53_003593	0.58	+1.7
4,034,594	-		ABIE53_003593	0.58	-0.2
4,034,594	-		ABIE53_003593	0.58	-0.4
4,034,594	-		ABIE53_003593	0.58	-1.0
4,034,614	+		ABIE53_003593	0.59	+0.2
4,034,614	+		ABIE53_003593	0.59	+1.5
4,034,614	+		ABIE53_003593	0.59	+1.5
4,034,615	-		ABIE53_003593	0.59	+1.0
4,034,615	-		ABIE53_003593	0.59	-0.9
4,034,615	-		ABIE53_003593	0.59	-0.9
4,034,615	-		ABIE53_003593	0.59	+0.1
4,034,615	-		ABIE53_003593	0.59	+0.3
4,034,645	+		ABIE53_003593	0.62	-0.5
4,034,645	+		ABIE53_003593	0.62	-2.2
4,034,645	+		ABIE53_003593	0.62	+1.7
4,034,645	+		ABIE53_003593	0.62	-2.0
4,034,645	+		ABIE53_003593	0.62	-1.6
4,034,645	+		ABIE53_003593	0.62	-1.4
4,034,645	+		ABIE53_003593	0.62	-2.1
4,034,646	-		ABIE53_003593	0.62	+1.1
4,034,646	-		ABIE53_003593	0.62	-0.4
4,034,646	-		ABIE53_003593	0.62	-3.1
4,034,646	-		ABIE53_003593	0.62	+1.1
4,034,679	+		ABIE53_003593	0.64	+0.9
4,034,680	-		ABIE53_003593	0.64	-0.8
4,034,680	-		ABIE53_003593	0.64	+0.6
4,034,728	+		ABIE53_003593	0.67	-1.1
4,034,728	+		ABIE53_003593	0.67	-0.1
4,034,728	+		ABIE53_003593	0.67	+0.2
4,034,728	+		ABIE53_003593	0.67	+2.0
4,034,728	+		ABIE53_003593	0.67	+1.3
4,034,728	+		ABIE53_003593	0.67	-0.5
4,034,728	+		ABIE53_003593	0.67	+1.5
4,034,728	+		ABIE53_003593	0.67	-1.2
4,034,728	+		ABIE53_003593	0.67	+0.8
4,034,728	+		ABIE53_003593	0.67	+0.9
4,034,728	+		ABIE53_003593	0.67	-2.2
4,034,729	-		ABIE53_003593	0.68	-0.6
4,034,729	-		ABIE53_003593	0.68	+0.2
4,034,729	-		ABIE53_003593	0.68	+0.4
4,034,729	-		ABIE53_003593	0.68	+0.3
4,034,729	-		ABIE53_003593	0.68	-0.5
4,034,770	+		ABIE53_003593	0.70	-1.3
4,034,771	-		ABIE53_003593	0.71	+3.8
4,034,771	-		ABIE53_003593	0.71	+2.1
4,034,771	-		ABIE53_003593	0.71	-1.7
4,034,880	+		ABIE53_003593	0.78	-1.2
4,034,881	-		ABIE53_003593	0.78	+2.8
4,034,997	+		ABIE53_003593	0.87	-2.3
4,034,997	+		ABIE53_003593	0.87	-2.0
4,034,998	-		ABIE53_003593	0.87	-1.1
4,035,283	+				+1.0
4,035,284	-				+0.4
4,035,343	+				-2.3
4,035,343	+				-0.3
4,035,343	+				-0.6
4,035,343	+				-1.7
4,035,343	+				-0.8
4,035,735	-		ABIE53_003594	0.28	+0.5
4,035,765	+		ABIE53_003594	0.31	-4.3
4,035,766	-		ABIE53_003594	0.31	-0.7
4,035,963	+		ABIE53_003594	0.46	+2.2
4,035,963	+		ABIE53_003594	0.46	-0.8
4,035,963	+		ABIE53_003594	0.46	-0.7
4,035,963	+		ABIE53_003594	0.46	+0.3
4,035,963	+		ABIE53_003594	0.46	-1.3
4,035,963	+		ABIE53_003594	0.46	-1.8
4,035,963	+		ABIE53_003594	0.46	-0.6
4,035,963	+		ABIE53_003594	0.46	+2.1
4,035,964	-		ABIE53_003594	0.46	-1.9
4,035,964	-		ABIE53_003594	0.46	-1.8
4,035,964	-		ABIE53_003594	0.46	-1.5
4,035,964	-		ABIE53_003594	0.46	-0.5
4,035,964	-		ABIE53_003594	0.46	-1.4
4,035,964	-		ABIE53_003594	0.46	+0.5
4,035,964	-		ABIE53_003594	0.46	-0.8
4,035,964	-		ABIE53_003594	0.46	+0.9
4,035,964	-		ABIE53_003594	0.46	+2.5
4,035,986	+		ABIE53_003594	0.48	+0.1
4,035,986	+		ABIE53_003594	0.48	+1.5
4,035,987	-		ABIE53_003594	0.48	+0.1
4,035,987	-		ABIE53_003594	0.48	+0.4
4,035,987	-		ABIE53_003594	0.48	-2.5
4,035,987	-		ABIE53_003594	0.48	+1.9
4,036,036	+		ABIE53_003594	0.52	+0.9
4,036,036	+		ABIE53_003594	0.52	-0.8
4,036,144	+		ABIE53_003594	0.60	-1.3
4,036,144	+		ABIE53_003594	0.60	+1.9
4,036,145	-		ABIE53_003594	0.60	+0.1
4,036,145	-		ABIE53_003594	0.60	-0.1
4,036,175	-		ABIE53_003594	0.62	-2.3
4,036,175	-		ABIE53_003594	0.62	-0.1
4,036,175	-		ABIE53_003594	0.62	-0.2
4,036,175	-		ABIE53_003594	0.62	+1.5
4,036,175	-		ABIE53_003594	0.62	-0.9
4,036,272	+		ABIE53_003594	0.70	-0.0
4,036,272	+		ABIE53_003594	0.70	+2.1
4,036,272	+		ABIE53_003594	0.70	-0.4
4,036,272	+		ABIE53_003594	0.70	-0.9
4,036,272	+		ABIE53_003594	0.70	-4.1
4,036,272	+		ABIE53_003594	0.70	+3.6
4,036,272	+		ABIE53_003594	0.70	+0.2
4,036,272	+		ABIE53_003594	0.70	-2.3
4,036,272	+		ABIE53_003594	0.70	+2.1
4,036,272	+		ABIE53_003594	0.70	+0.5
4,036,272	+		ABIE53_003594	0.70	-0.1
4,036,272	+		ABIE53_003594	0.70	-0.1
4,036,272	+		ABIE53_003594	0.70	-1.7
4,036,273	-		ABIE53_003594	0.70	-1.4
4,036,273	-		ABIE53_003594	0.70	+1.5
4,036,273	-		ABIE53_003594	0.70	-0.0
4,036,372	+		ABIE53_003594	0.78	-1.1
4,036,372	+		ABIE53_003594	0.78	-0.4
4,036,372	+		ABIE53_003594	0.78	-0.1
4,036,373	-		ABIE53_003594	0.78	-0.2
4,036,373	-		ABIE53_003594	0.78	-1.0
4,036,419	+		ABIE53_003594	0.81	-0.5
4,036,419	+		ABIE53_003594	0.81	+0.6
4,036,420	-		ABIE53_003594	0.81	-0.7
4,037,066	+		ABIE53_003595	0.33	+1.0
4,037,066	+		ABIE53_003595	0.33	+1.3
4,037,066	+		ABIE53_003595	0.33	+2.2
4,037,066	+		ABIE53_003595	0.33	+0.2
4,037,066	+		ABIE53_003595	0.33	+0.6
4,037,066	+		ABIE53_003595	0.33	+0.5
4,037,066	+		ABIE53_003595	0.33	-1.7
4,037,066	+		ABIE53_003595	0.33	-2.1
4,037,066	+		ABIE53_003595	0.33	+0.4
4,037,066	+		ABIE53_003595	0.33	+0.3
4,037,066	+		ABIE53_003595	0.33	+0.5
4,037,067	-		ABIE53_003595	0.33	-0.1
4,037,067	-		ABIE53_003595	0.33	-0.2
4,037,067	-		ABIE53_003595	0.33	-1.2
4,037,067	-		ABIE53_003595	0.33	+0.9
4,037,067	-		ABIE53_003595	0.33	-1.3
4,037,067	-		ABIE53_003595	0.33	-2.3
4,037,067	-		ABIE53_003595	0.33	-0.7
4,037,067	-		ABIE53_003595	0.33	+0.9
4,037,067	-		ABIE53_003595	0.33	-0.5
4,037,067	-		ABIE53_003595	0.33	+2.5
4,037,067	-		ABIE53_003595	0.33	-0.7
4,037,186	+		ABIE53_003595	0.43	+1.4
4,037,186	+		ABIE53_003595	0.43	+2.5
4,037,186	+		ABIE53_003595	0.43	+2.5
4,037,186	+		ABIE53_003595	0.43	-0.7
4,037,208	+		ABIE53_003595	0.45	-1.4
4,037,208	+		ABIE53_003595	0.45	+0.4
4,037,208	+		ABIE53_003595	0.45	-0.1
4,037,208	+		ABIE53_003595	0.45	+0.5
4,037,208	+		ABIE53_003595	0.45	+2.3
4,037,208	+		ABIE53_003595	0.45	+1.0
4,037,208	+		ABIE53_003595	0.45	+0.3
4,037,208	+		ABIE53_003595	0.45	-1.3
4,037,208	+		ABIE53_003595	0.45	+0.3
4,037,208	+		ABIE53_003595	0.45	+0.1
4,037,208	+		ABIE53_003595	0.45	-0.1
4,037,208	+		ABIE53_003595	0.45	-1.0
4,037,209	-		ABIE53_003595	0.45	-1.3
4,037,209	-		ABIE53_003595	0.45	+0.9
4,037,209	-		ABIE53_003595	0.45	-0.8
4,037,209	-		ABIE53_003595	0.45	-1.4
4,037,209	-		ABIE53_003595	0.45	+1.5
4,037,209	-		ABIE53_003595	0.45	+0.2
4,037,209	-		ABIE53_003595	0.45	+0.0
4,037,209	-		ABIE53_003595	0.45	-1.8
4,037,209	-		ABIE53_003595	0.45	+0.3
4,037,209	-		ABIE53_003595	0.45	-1.2
4,037,310	+		ABIE53_003595	0.53	+2.5
4,037,310	+		ABIE53_003595	0.53	+0.4
4,037,310	+		ABIE53_003595	0.53	-0.0
4,037,311	-		ABIE53_003595	0.53	-1.5
4,037,311	-		ABIE53_003595	0.53	-1.9