Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000738 and ABIE53_000739 overlap by 14 nucleotides ABIE53_000739 and ABIE53_000740 are separated by 2 nucleotides ABIE53_000740 and ABIE53_000741 are separated by 67 nucleotides ABIE53_000741 and ABIE53_000742 overlap by 4 nucleotides
ABIE53_000738: ABIE53_000738 - cytochrome c oxidase subunit 1, at 796,325 to 797,950
_000738
ABIE53_000739: ABIE53_000739 - cytochrome c oxidase subunit 2, at 797,937 to 798,515
_000739
ABIE53_000740: ABIE53_000740 - hypothetical protein, at 798,518 to 798,694
_000740
ABIE53_000741: ABIE53_000741 - mono/diheme cytochrome c family protein, at 798,762 to 800,102
_000741
ABIE53_000742: ABIE53_000742 - cytochrome c553, at 800,099 to 800,815
_000742
Position (kb) 798
799
800
801 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 797.775 kb on + strand, within ABIE53_000738 at 797.775 kb on + strand, within ABIE53_000738 at 797.775 kb on + strand, within ABIE53_000738 at 797.776 kb on - strand, within ABIE53_000738 at 797.776 kb on - strand, within ABIE53_000738 at 797.776 kb on - strand, within ABIE53_000738 at 797.811 kb on + strand at 797.814 kb on + strand at 797.814 kb on + strand at 797.814 kb on + strand at 797.814 kb on + strand at 797.815 kb on - strand at 797.815 kb on - strand at 797.815 kb on - strand at 797.939 kb on - strand at 798.110 kb on - strand, within ABIE53_000739 at 798.238 kb on + strand, within ABIE53_000739 at 798.392 kb on - strand, within ABIE53_000739 at 798.392 kb on - strand, within ABIE53_000739 at 798.414 kb on + strand, within ABIE53_000739 at 798.414 kb on + strand, within ABIE53_000739 at 798.414 kb on + strand, within ABIE53_000739 at 798.415 kb on - strand, within ABIE53_000739 at 798.415 kb on - strand, within ABIE53_000739 at 798.555 kb on + strand, within ABIE53_000740 at 798.555 kb on + strand, within ABIE53_000740 at 798.555 kb on + strand, within ABIE53_000740 at 798.555 kb on + strand, within ABIE53_000740 at 798.555 kb on + strand, within ABIE53_000740 at 798.555 kb on + strand, within ABIE53_000740 at 798.555 kb on + strand, within ABIE53_000740 at 798.556 kb on - strand, within ABIE53_000740 at 798.556 kb on - strand, within ABIE53_000740 at 798.556 kb on - strand, within ABIE53_000740 at 798.556 kb on - strand, within ABIE53_000740 at 798.556 kb on - strand, within ABIE53_000740 at 798.590 kb on - strand, within ABIE53_000740 at 798.842 kb on + strand at 798.843 kb on - strand at 798.844 kb on + strand at 798.844 kb on + strand at 798.844 kb on + strand at 798.844 kb on + strand at 798.844 kb on + strand at 798.844 kb on + strand at 798.844 kb on + strand at 798.845 kb on - strand at 798.845 kb on - strand at 798.845 kb on - strand at 798.845 kb on - strand at 798.845 kb on - strand at 799.072 kb on + strand, within ABIE53_000741 at 799.072 kb on + strand, within ABIE53_000741 at 799.072 kb on + strand, within ABIE53_000741 at 799.072 kb on + strand, within ABIE53_000741 at 799.073 kb on - strand, within ABIE53_000741 at 799.073 kb on - strand, within ABIE53_000741 at 799.095 kb on + strand, within ABIE53_000741 at 799.095 kb on + strand, within ABIE53_000741 at 799.095 kb on + strand, within ABIE53_000741 at 799.096 kb on - strand, within ABIE53_000741 at 799.096 kb on - strand, within ABIE53_000741 at 799.096 kb on - strand, within ABIE53_000741 at 799.096 kb on - strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.213 kb on + strand, within ABIE53_000741 at 799.214 kb on - strand, within ABIE53_000741 at 799.214 kb on - strand, within ABIE53_000741 at 799.214 kb on - strand, within ABIE53_000741 at 799.214 kb on - strand, within ABIE53_000741 at 799.214 kb on - strand, within ABIE53_000741 at 799.237 kb on + strand, within ABIE53_000741 at 799.238 kb on - strand, within ABIE53_000741 at 799.238 kb on - strand, within ABIE53_000741 at 799.238 kb on - strand, within ABIE53_000741 at 799.238 kb on - strand, within ABIE53_000741 at 799.238 kb on - strand, within ABIE53_000741 at 799.238 kb on - strand, within ABIE53_000741 at 799.342 kb on + strand, within ABIE53_000741 at 799.342 kb on + strand, within ABIE53_000741 at 799.343 kb on - strand, within ABIE53_000741 at 799.343 kb on - strand, within ABIE53_000741 at 799.343 kb on - strand, within ABIE53_000741 at 799.343 kb on - strand, within ABIE53_000741 at 799.457 kb on - strand, within ABIE53_000741 at 799.519 kb on + strand, within ABIE53_000741 at 799.519 kb on + strand, within ABIE53_000741 at 799.520 kb on - strand, within ABIE53_000741 at 799.520 kb on - strand, within ABIE53_000741 at 799.537 kb on + strand, within ABIE53_000741 at 799.537 kb on + strand, within ABIE53_000741 at 799.538 kb on - strand, within ABIE53_000741 at 799.538 kb on - strand, within ABIE53_000741 at 799.538 kb on - strand, within ABIE53_000741 at 799.538 kb on - strand, within ABIE53_000741 at 799.539 kb on + strand, within ABIE53_000741 at 799.539 kb on + strand, within ABIE53_000741 at 799.539 kb on + strand, within ABIE53_000741 at 799.540 kb on - strand, within ABIE53_000741 at 799.540 kb on - strand, within ABIE53_000741 at 799.540 kb on - strand, within ABIE53_000741 at 799.540 kb on - strand, within ABIE53_000741 at 799.618 kb on + strand, within ABIE53_000741 at 799.660 kb on + strand, within ABIE53_000741 at 799.660 kb on + strand, within ABIE53_000741 at 799.661 kb on - strand, within ABIE53_000741 at 799.661 kb on - strand, within ABIE53_000741 at 799.762 kb on + strand, within ABIE53_000741 at 799.762 kb on + strand, within ABIE53_000741 at 799.763 kb on - strand, within ABIE53_000741 at 799.793 kb on - strand, within ABIE53_000741 at 799.892 kb on - strand, within ABIE53_000741 at 799.892 kb on - strand, within ABIE53_000741 at 799.892 kb on - strand, within ABIE53_000741 at 800.199 kb on - strand, within ABIE53_000742 at 800.305 kb on + strand, within ABIE53_000742 at 800.306 kb on - strand, within ABIE53_000742 at 800.306 kb on - strand, within ABIE53_000742 at 800.306 kb on - strand, within ABIE53_000742 at 800.306 kb on - strand, within ABIE53_000742 at 800.306 kb on - strand, within ABIE53_000742 at 800.306 kb on - strand, within ABIE53_000742 at 800.307 kb on + strand, within ABIE53_000742 at 800.307 kb on + strand, within ABIE53_000742 at 800.307 kb on + strand, within ABIE53_000742 at 800.307 kb on + strand, within ABIE53_000742 at 800.307 kb on + strand, within ABIE53_000742 at 800.307 kb on + strand, within ABIE53_000742 at 800.308 kb on - strand, within ABIE53_000742 at 800.308 kb on - strand, within ABIE53_000742 at 800.308 kb on - strand, within ABIE53_000742 at 800.308 kb on - strand, within ABIE53_000742 at 800.308 kb on - strand, within ABIE53_000742 at 800.308 kb on - strand, within ABIE53_000742 at 800.308 kb on - strand, within ABIE53_000742 at 800.502 kb on + strand, within ABIE53_000742 at 800.502 kb on + strand, within ABIE53_000742 at 800.502 kb on + strand, within ABIE53_000742 at 800.502 kb on + strand, within ABIE53_000742 at 800.503 kb on - strand, within ABIE53_000742 at 800.503 kb on - strand, within ABIE53_000742 at 800.503 kb on - strand, within ABIE53_000742 at 800.523 kb on + strand, within ABIE53_000742 at 800.524 kb on - strand, within ABIE53_000742 at 800.524 kb on - strand, within ABIE53_000742 at 800.550 kb on + strand, within ABIE53_000742 at 800.550 kb on + strand, within ABIE53_000742 at 800.551 kb on - strand, within ABIE53_000742 at 800.566 kb on - strand, within ABIE53_000742 at 800.566 kb on - strand, within ABIE53_000742 at 800.569 kb on + strand, within ABIE53_000742 at 800.570 kb on - strand, within ABIE53_000742 at 800.570 kb on - strand, within ABIE53_000742 at 800.570 kb on - strand, within ABIE53_000742 at 800.570 kb on - strand, within ABIE53_000742 at 800.610 kb on + strand, within ABIE53_000742 at 800.610 kb on + strand, within ABIE53_000742 at 800.611 kb on - strand, within ABIE53_000742 at 800.643 kb on + strand, within ABIE53_000742 at 800.644 kb on - strand, within ABIE53_000742 at 800.644 kb on - strand, within ABIE53_000742 at 800.650 kb on + strand, within ABIE53_000742 at 800.780 kb on - strand at 800.780 kb on - strand at 800.806 kb on + strand at 800.806 kb on + strand at 800.806 kb on + strand at 800.807 kb on - strand at 800.807 kb on - strand at 800.807 kb on - strand at 800.807 kb on - strand at 800.914 kb on + strand at 800.929 kb on + strand at 800.929 kb on + strand at 800.929 kb on + strand at 800.929 kb on + strand at 800.930 kb on - strand at 800.958 kb on + strand at 800.958 kb on + strand at 800.959 kb on - strand at 800.959 kb on - strand at 800.959 kb on - strand at 800.959 kb on - strand at 800.959 kb on - strand at 800.971 kb on - strand at 800.971 kb on - strand at 800.971 kb on - strand at 801.026 kb on + strand at 801.026 kb on + strand at 801.026 kb on + strand at 801.026 kb on + strand at 801.026 kb on + strand at 801.026 kb on + strand at 801.026 kb on + strand at 801.027 kb on - strand at 801.027 kb on - strand at 801.027 kb on - strand at 801.027 kb on - strand at 801.027 kb on - strand at 801.027 kb on - strand at 801.027 kb on - strand at 801.027 kb on - strand at 801.069 kb on + strand at 801.070 kb on + strand at 801.070 kb on + strand at 801.070 kb on + strand at 801.070 kb on + strand at 801.070 kb on + strand at 801.070 kb on + strand at 801.070 kb on + strand at 801.070 kb on + strand at 801.071 kb on - strand at 801.071 kb on - strand at 801.071 kb on - strand at 801.071 kb on - strand at 801.071 kb on - strand at 801.071 kb on - strand at 801.071 kb on - strand at 801.071 kb on - strand at 801.071 kb on - strand at 801.071 kb on - strand at 801.071 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days remove 797,775 + ABIE53_000738 0.89 -0.9 797,775 + ABIE53_000738 0.89 -0.1 797,775 + ABIE53_000738 0.89 -0.5 797,776 - ABIE53_000738 0.89 +0.5 797,776 - ABIE53_000738 0.89 +1.5 797,776 - ABIE53_000738 0.89 -1.4 797,811 + +0.5 797,814 + +1.3 797,814 + -0.5 797,814 + +3.5 797,814 + +0.5 797,815 - -0.2 797,815 - -0.3 797,815 - -0.3 797,939 - -0.3 798,110 - ABIE53_000739 0.30 +0.9 798,238 + ABIE53_000739 0.52 +1.4 798,392 - ABIE53_000739 0.79 -0.1 798,392 - ABIE53_000739 0.79 -1.4 798,414 + ABIE53_000739 0.82 +0.2 798,414 + ABIE53_000739 0.82 +1.6 798,414 + ABIE53_000739 0.82 +0.5 798,415 - ABIE53_000739 0.83 -2.1 798,415 - ABIE53_000739 0.83 +0.9 798,555 + ABIE53_000740 0.21 +3.4 798,555 + ABIE53_000740 0.21 +0.8 798,555 + ABIE53_000740 0.21 -2.3 798,555 + ABIE53_000740 0.21 -0.2 798,555 + ABIE53_000740 0.21 -0.5 798,555 + ABIE53_000740 0.21 -1.6 798,555 + ABIE53_000740 0.21 -0.3 798,556 - ABIE53_000740 0.21 +0.2 798,556 - ABIE53_000740 0.21 -1.2 798,556 - ABIE53_000740 0.21 -1.3 798,556 - ABIE53_000740 0.21 +2.9 798,556 - ABIE53_000740 0.21 +0.3 798,590 - ABIE53_000740 0.41 +2.0 798,842 + +2.7 798,843 - -0.1 798,844 + +0.9 798,844 + -1.7 798,844 + -0.8 798,844 + +0.2 798,844 + +0.2 798,844 + +0.5 798,844 + -0.5 798,845 - +0.8 798,845 - +0.6 798,845 - -0.2 798,845 - -1.3 798,845 - -2.4 799,072 + ABIE53_000741 0.23 +2.3 799,072 + ABIE53_000741 0.23 +0.6 799,072 + ABIE53_000741 0.23 -1.7 799,072 + ABIE53_000741 0.23 -0.4 799,073 - ABIE53_000741 0.23 +0.3 799,073 - ABIE53_000741 0.23 -1.4 799,095 + ABIE53_000741 0.25 -0.8 799,095 + ABIE53_000741 0.25 -0.6 799,095 + ABIE53_000741 0.25 -0.1 799,096 - ABIE53_000741 0.25 +0.2 799,096 - ABIE53_000741 0.25 +2.5 799,096 - ABIE53_000741 0.25 -0.5 799,096 - ABIE53_000741 0.25 +0.5 799,198 + ABIE53_000741 0.33 -0.7 799,198 + ABIE53_000741 0.33 +0.3 799,198 + ABIE53_000741 0.33 +0.7 799,198 + ABIE53_000741 0.33 +0.6 799,198 + ABIE53_000741 0.33 +0.7 799,198 + ABIE53_000741 0.33 -0.5 799,198 + ABIE53_000741 0.33 +0.3 799,198 + ABIE53_000741 0.33 +5.7 799,198 + ABIE53_000741 0.33 +0.4 799,198 + ABIE53_000741 0.33 -2.4 799,198 + ABIE53_000741 0.33 -0.0 799,198 + ABIE53_000741 0.33 -1.4 799,199 - ABIE53_000741 0.33 -0.1 799,199 - ABIE53_000741 0.33 -1.7 799,199 - ABIE53_000741 0.33 -0.4 799,199 - ABIE53_000741 0.33 -1.5 799,199 - ABIE53_000741 0.33 -0.7 799,199 - ABIE53_000741 0.33 +0.2 799,199 - ABIE53_000741 0.33 -0.3 799,199 - ABIE53_000741 0.33 -1.2 799,199 - ABIE53_000741 0.33 +0.5 799,199 - ABIE53_000741 0.33 -0.5 799,199 - ABIE53_000741 0.33 +0.5 799,213 + ABIE53_000741 0.34 -2.1 799,214 - ABIE53_000741 0.34 +1.5 799,214 - ABIE53_000741 0.34 -0.8 799,214 - ABIE53_000741 0.34 -0.6 799,214 - ABIE53_000741 0.34 -0.8 799,214 - ABIE53_000741 0.34 +0.1 799,237 + ABIE53_000741 0.35 +0.8 799,238 - ABIE53_000741 0.35 +0.1 799,238 - ABIE53_000741 0.35 +1.5 799,238 - ABIE53_000741 0.35 -1.4 799,238 - ABIE53_000741 0.35 +0.1 799,238 - ABIE53_000741 0.35 +2.5 799,238 - ABIE53_000741 0.35 +1.3 799,342 + ABIE53_000741 0.43 +0.2 799,342 + ABIE53_000741 0.43 -2.1 799,343 - ABIE53_000741 0.43 -1.2 799,343 - ABIE53_000741 0.43 +0.5 799,343 - ABIE53_000741 0.43 +0.2 799,343 - ABIE53_000741 0.43 -2.6 799,457 - ABIE53_000741 0.52 +0.2 799,519 + ABIE53_000741 0.56 -1.4 799,519 + ABIE53_000741 0.56 +3.5 799,520 - ABIE53_000741 0.57 +1.5 799,520 - ABIE53_000741 0.57 -1.1 799,537 + ABIE53_000741 0.58 +0.1 799,537 + ABIE53_000741 0.58 +0.6 799,538 - ABIE53_000741 0.58 -1.0 799,538 - ABIE53_000741 0.58 +0.9 799,538 - ABIE53_000741 0.58 -0.3 799,538 - ABIE53_000741 0.58 -0.2 799,539 + ABIE53_000741 0.58 -0.1 799,539 + ABIE53_000741 0.58 -0.5 799,539 + ABIE53_000741 0.58 -1.0 799,540 - ABIE53_000741 0.58 +0.5 799,540 - ABIE53_000741 0.58 +0.9 799,540 - ABIE53_000741 0.58 -1.8 799,540 - ABIE53_000741 0.58 +0.2 799,618 + ABIE53_000741 0.64 -0.6 799,660 + ABIE53_000741 0.67 -1.0 799,660 + ABIE53_000741 0.67 +0.2 799,661 - ABIE53_000741 0.67 -0.8 799,661 - ABIE53_000741 0.67 +1.5 799,762 + ABIE53_000741 0.75 -0.5 799,762 + ABIE53_000741 0.75 -0.6 799,763 - ABIE53_000741 0.75 +1.2 799,793 - ABIE53_000741 0.77 +1.5 799,892 - ABIE53_000741 0.84 +0.2 799,892 - ABIE53_000741 0.84 -0.5 799,892 - ABIE53_000741 0.84 +0.5 800,199 - ABIE53_000742 0.14 -0.0 800,305 + ABIE53_000742 0.29 -1.5 800,306 - ABIE53_000742 0.29 +2.0 800,306 - ABIE53_000742 0.29 -0.5 800,306 - ABIE53_000742 0.29 -0.1 800,306 - ABIE53_000742 0.29 +0.2 800,306 - ABIE53_000742 0.29 -1.1 800,306 - ABIE53_000742 0.29 +2.1 800,307 + ABIE53_000742 0.29 -1.9 800,307 + ABIE53_000742 0.29 -0.8 800,307 + ABIE53_000742 0.29 +0.7 800,307 + ABIE53_000742 0.29 +0.9 800,307 + ABIE53_000742 0.29 -0.1 800,307 + ABIE53_000742 0.29 +1.6 800,308 - ABIE53_000742 0.29 -3.6 800,308 - ABIE53_000742 0.29 +1.1 800,308 - ABIE53_000742 0.29 +0.6 800,308 - ABIE53_000742 0.29 -1.2 800,308 - ABIE53_000742 0.29 +0.4 800,308 - ABIE53_000742 0.29 -0.3 800,308 - ABIE53_000742 0.29 +0.3 800,502 + ABIE53_000742 0.56 -1.7 800,502 + ABIE53_000742 0.56 -2.6 800,502 + ABIE53_000742 0.56 +0.9 800,502 + ABIE53_000742 0.56 +2.5 800,503 - ABIE53_000742 0.56 +1.5 800,503 - ABIE53_000742 0.56 +0.4 800,503 - ABIE53_000742 0.56 +3.8 800,523 + ABIE53_000742 0.59 +1.3 800,524 - ABIE53_000742 0.59 +1.3 800,524 - ABIE53_000742 0.59 -0.1 800,550 + ABIE53_000742 0.63 -0.5 800,550 + ABIE53_000742 0.63 -0.8 800,551 - ABIE53_000742 0.63 +0.7 800,566 - ABIE53_000742 0.65 -0.1 800,566 - ABIE53_000742 0.65 -0.0 800,569 + ABIE53_000742 0.66 -0.3 800,570 - ABIE53_000742 0.66 -1.4 800,570 - ABIE53_000742 0.66 -0.1 800,570 - ABIE53_000742 0.66 -1.2 800,570 - ABIE53_000742 0.66 -1.9 800,610 + ABIE53_000742 0.71 -1.3 800,610 + ABIE53_000742 0.71 +0.4 800,611 - ABIE53_000742 0.71 +2.5 800,643 + ABIE53_000742 0.76 +0.5 800,644 - ABIE53_000742 0.76 -1.5 800,644 - ABIE53_000742 0.76 +1.2 800,650 + ABIE53_000742 0.77 -0.7 800,780 - +1.5 800,780 - -0.7 800,806 + +0.5 800,806 + +0.8 800,806 + -0.3 800,807 - -2.4 800,807 - +0.2 800,807 - -1.2 800,807 - -0.5 800,914 + -0.1 800,929 + +0.2 800,929 + +1.5 800,929 + -0.4 800,929 + +0.9 800,930 - -1.4 800,958 + -1.0 800,958 + -0.3 800,959 - +2.4 800,959 - +0.4 800,959 - +1.1 800,959 - -1.1 800,959 - -2.9 800,971 - +0.7 800,971 - +0.5 800,971 - -1.1 801,026 + +0.3 801,026 + +2.1 801,026 + +1.1 801,026 + -2.2 801,026 + -0.1 801,026 + -1.3 801,026 + -1.1 801,027 - -2.1 801,027 - -1.6 801,027 - +1.7 801,027 - -1.3 801,027 - -3.5 801,027 - -0.1 801,027 - +1.8 801,027 - +1.4 801,069 + +1.0 801,070 + +0.1 801,070 + -1.9 801,070 + -1.2 801,070 + -0.1 801,070 + +1.0 801,070 + -0.7 801,070 + +1.5 801,070 + +0.5 801,071 - +1.3 801,071 - -1.8 801,071 - -1.2 801,071 - -0.3 801,071 - +2.3 801,071 - +0.9 801,071 - -0.5 801,071 - +0.8 801,071 - +0.2 801,071 - -0.4 801,071 - -1.1
Or see this region's nucleotide sequence