Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000052

Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar_0.5%; Collection=R2A_with_kan10; Time=21days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000051 and ABIE53_000052 are separated by 215 nucleotidesABIE53_000052 and ABIE53_000053 are separated by 14 nucleotides ABIE53_000051: ABIE53_000051 - putative membrane protein, at 59,290 to 60,246 _000051 ABIE53_000052: ABIE53_000052 - tetratricopeptide (TPR) repeat protein, at 60,462 to 62,273 _000052 ABIE53_000053: ABIE53_000053 - uncharacterized protein YbaP (TraB family), at 62,288 to 63,466 _000053 Position (kb) 60 61 62 63Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 59.893 kb on + strand, within ABIE53_000051at 59.893 kb on + strand, within ABIE53_000051at 59.893 kb on + strand, within ABIE53_000051at 59.893 kb on + strand, within ABIE53_000051at 59.893 kb on + strand, within ABIE53_000051at 59.893 kb on + strand, within ABIE53_000051at 59.893 kb on + strand, within ABIE53_000051at 59.894 kb on - strand, within ABIE53_000051at 59.894 kb on - strand, within ABIE53_000051at 59.894 kb on - strand, within ABIE53_000051at 59.894 kb on - strand, within ABIE53_000051at 59.894 kb on - strand, within ABIE53_000051at 59.894 kb on - strand, within ABIE53_000051at 59.894 kb on - strand, within ABIE53_000051at 59.932 kb on + strand, within ABIE53_000051at 59.932 kb on + strand, within ABIE53_000051at 59.932 kb on + strand, within ABIE53_000051at 59.933 kb on - strand, within ABIE53_000051at 59.933 kb on - strand, within ABIE53_000051at 59.933 kb on - strand, within ABIE53_000051at 59.933 kb on - strand, within ABIE53_000051at 59.933 kb on - strand, within ABIE53_000051at 60.244 kb on + strandat 60.244 kb on + strandat 60.245 kb on - strandat 60.245 kb on - strandat 60.245 kb on - strandat 60.245 kb on - strandat 60.318 kb on + strandat 60.318 kb on + strandat 60.319 kb on - strandat 60.384 kb on + strandat 60.384 kb on + strandat 60.384 kb on + strandat 60.384 kb on + strandat 60.385 kb on - strandat 60.385 kb on - strandat 60.385 kb on - strandat 60.385 kb on - strandat 60.385 kb on - strandat 60.405 kb on - strandat 60.405 kb on - strandat 60.424 kb on + strandat 60.424 kb on + strandat 60.424 kb on + strandat 60.424 kb on + strandat 60.425 kb on - strandat 60.425 kb on - strandat 60.597 kb on + strandat 60.597 kb on + strandat 60.645 kb on + strand, within ABIE53_000052at 60.645 kb on + strand, within ABIE53_000052at 60.645 kb on + strand, within ABIE53_000052at 60.646 kb on - strand, within ABIE53_000052at 60.646 kb on - strand, within ABIE53_000052at 60.646 kb on - strand, within ABIE53_000052at 60.664 kb on - strand, within ABIE53_000052at 60.801 kb on + strand, within ABIE53_000052at 60.801 kb on + strand, within ABIE53_000052at 60.848 kb on + strand, within ABIE53_000052at 60.848 kb on + strand, within ABIE53_000052at 60.848 kb on + strand, within ABIE53_000052at 60.849 kb on - strand, within ABIE53_000052at 60.849 kb on - strand, within ABIE53_000052at 60.849 kb on - strand, within ABIE53_000052at 60.903 kb on + strand, within ABIE53_000052at 60.903 kb on + strand, within ABIE53_000052at 60.904 kb on - strand, within ABIE53_000052at 60.904 kb on - strand, within ABIE53_000052at 61.070 kb on + strand, within ABIE53_000052at 61.070 kb on + strand, within ABIE53_000052at 61.070 kb on + strand, within ABIE53_000052at 61.071 kb on - strand, within ABIE53_000052at 61.137 kb on + strand, within ABIE53_000052at 61.137 kb on + strand, within ABIE53_000052at 61.188 kb on + strand, within ABIE53_000052at 61.188 kb on + strand, within ABIE53_000052at 61.188 kb on + strand, within ABIE53_000052at 61.189 kb on - strand, within ABIE53_000052at 61.189 kb on - strand, within ABIE53_000052at 61.189 kb on - strand, within ABIE53_000052at 61.210 kb on - strand, within ABIE53_000052at 61.308 kb on + strand, within ABIE53_000052at 61.308 kb on + strand, within ABIE53_000052at 61.308 kb on + strand, within ABIE53_000052at 61.309 kb on - strand, within ABIE53_000052at 61.309 kb on - strand, within ABIE53_000052at 61.309 kb on - strand, within ABIE53_000052at 61.309 kb on - strand, within ABIE53_000052at 61.338 kb on + strand, within ABIE53_000052at 61.338 kb on + strand, within ABIE53_000052at 61.338 kb on + strand, within ABIE53_000052at 61.389 kb on + strand, within ABIE53_000052at 61.390 kb on - strand, within ABIE53_000052at 61.437 kb on + strand, within ABIE53_000052at 61.437 kb on + strand, within ABIE53_000052at 61.437 kb on + strand, within ABIE53_000052at 61.437 kb on + strand, within ABIE53_000052at 61.674 kb on + strand, within ABIE53_000052at 61.752 kb on + strand, within ABIE53_000052at 61.752 kb on + strand, within ABIE53_000052at 61.752 kb on + strand, within ABIE53_000052at 61.752 kb on + strand, within ABIE53_000052at 61.752 kb on + strand, within ABIE53_000052at 61.753 kb on - strand, within ABIE53_000052at 61.753 kb on - strand, within ABIE53_000052at 61.756 kb on + strand, within ABIE53_000052at 61.756 kb on + strand, within ABIE53_000052at 61.756 kb on + strand, within ABIE53_000052at 61.756 kb on + strand, within ABIE53_000052at 61.756 kb on + strand, within ABIE53_000052at 61.757 kb on - strand, within ABIE53_000052at 61.757 kb on - strand, within ABIE53_000052at 61.757 kb on - strand, within ABIE53_000052at 61.757 kb on - strand, within ABIE53_000052at 61.757 kb on - strand, within ABIE53_000052at 61.901 kb on + strand, within ABIE53_000052at 61.901 kb on + strand, within ABIE53_000052at 61.901 kb on + strand, within ABIE53_000052at 61.901 kb on + strand, within ABIE53_000052at 61.901 kb on + strand, within ABIE53_000052at 61.902 kb on - strand, within ABIE53_000052at 61.902 kb on - strand, within ABIE53_000052at 61.902 kb on - strand, within ABIE53_000052at 61.902 kb on - strand, within ABIE53_000052at 61.902 kb on - strand, within ABIE53_000052at 61.902 kb on - strand, within ABIE53_000052at 61.902 kb on - strand, within ABIE53_000052at 61.902 kb on - strand, within ABIE53_000052at 61.932 kb on + strand, within ABIE53_000052at 61.933 kb on - strand, within ABIE53_000052at 62.267 kb on + strandat 62.267 kb on + strandat 62.271 kb on + strandat 62.272 kb on - strandat 62.272 kb on - strandat 62.289 kb on + strandat 62.289 kb on + strandat 62.290 kb on - strandat 62.378 kb on + strandat 62.378 kb on + strandat 62.378 kb on + strandat 62.378 kb on + strandat 62.379 kb on - strandat 62.379 kb on - strandat 62.440 kb on - strand, within ABIE53_000053at 62.707 kb on - strand, within ABIE53_000053at 62.707 kb on - strand, within ABIE53_000053at 62.736 kb on + strand, within ABIE53_000053at 62.736 kb on + strand, within ABIE53_000053at 62.769 kb on + strand, within ABIE53_000053at 62.769 kb on + strand, within ABIE53_000053at 62.769 kb on + strand, within ABIE53_000053at 62.770 kb on - strand, within ABIE53_000053at 62.770 kb on - strand, within ABIE53_000053at 62.770 kb on - strand, within ABIE53_000053at 62.909 kb on + strand, within ABIE53_000053at 62.910 kb on - strand, within ABIE53_000053at 62.910 kb on - strand, within ABIE53_000053at 62.910 kb on - strand, within ABIE53_000053at 62.910 kb on - strand, within ABIE53_000053at 62.910 kb on - strand, within ABIE53_000053at 62.910 kb on - strand, within ABIE53_000053at 62.917 kb on - strand, within ABIE53_000053at 63.033 kb on + strand, within ABIE53_000053at 63.034 kb on - strand, within ABIE53_000053at 63.072 kb on + strand, within ABIE53_000053at 63.072 kb on + strand, within ABIE53_000053at 63.072 kb on + strand, within ABIE53_000053at 63.072 kb on + strand, within ABIE53_000053at 63.073 kb on - strand, within ABIE53_000053at 63.073 kb on - strand, within ABIE53_000053at 63.073 kb on - strand, within ABIE53_000053at 63.073 kb on - strand, within ABIE53_000053at 63.102 kb on + strand, within ABIE53_000053at 63.102 kb on + strand, within ABIE53_000053at 63.102 kb on + strand, within ABIE53_000053at 63.102 kb on + strand, within ABIE53_000053at 63.103 kb on - strand, within ABIE53_000053at 63.103 kb on - strand, within ABIE53_000053at 63.103 kb on - strand, within ABIE53_000053at 63.131 kb on + strand, within ABIE53_000053at 63.131 kb on + strand, within ABIE53_000053

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar_0.5%; Collection=R2A_with_kan10; Time=21days
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59,893 + ABIE53_000051 0.63 -1.4
59,893 + ABIE53_000051 0.63 -0.8
59,893 + ABIE53_000051 0.63 +0.8
59,893 + ABIE53_000051 0.63 -2.0
59,893 + ABIE53_000051 0.63 -1.8
59,893 + ABIE53_000051 0.63 -1.0
59,893 + ABIE53_000051 0.63 -1.8
59,894 - ABIE53_000051 0.63 +0.7
59,894 - ABIE53_000051 0.63 +0.5
59,894 - ABIE53_000051 0.63 +0.1
59,894 - ABIE53_000051 0.63 -0.8
59,894 - ABIE53_000051 0.63 -2.0
59,894 - ABIE53_000051 0.63 -0.9
59,894 - ABIE53_000051 0.63 -0.9
59,932 + ABIE53_000051 0.67 -0.9
59,932 + ABIE53_000051 0.67 +0.7
59,932 + ABIE53_000051 0.67 -1.0
59,933 - ABIE53_000051 0.67 +0.8
59,933 - ABIE53_000051 0.67 +1.0
59,933 - ABIE53_000051 0.67 +0.6
59,933 - ABIE53_000051 0.67 +1.4
59,933 - ABIE53_000051 0.67 +0.9
60,244 + +1.0
60,244 + -1.3
60,245 - +0.2
60,245 - -0.3
60,245 - -1.4
60,245 - +1.3
60,318 + -2.2
60,318 + -1.8
60,319 - -1.4
60,384 + -0.4
60,384 + -0.8
60,384 + -0.8
60,384 + -1.9
60,385 - -1.5
60,385 - -0.7
60,385 - -1.0
60,385 - -3.0
60,385 - +0.4
60,405 - -1.6
60,405 - +0.1
60,424 + +0.1
60,424 + -0.6
60,424 + +1.1
60,424 + -0.4
60,425 - -0.1
60,425 - +1.5
60,597 + -3.5
60,597 + -0.8
60,645 + ABIE53_000052 0.10 -0.9
60,645 + ABIE53_000052 0.10 +0.8
60,645 + ABIE53_000052 0.10 +0.8
60,646 - ABIE53_000052 0.10 +1.0
60,646 - ABIE53_000052 0.10 +1.4
60,646 - ABIE53_000052 0.10 -1.8
60,664 - ABIE53_000052 0.11 +1.4
60,801 + ABIE53_000052 0.19 -0.6
60,801 + ABIE53_000052 0.19 +0.2
60,848 + ABIE53_000052 0.21 -1.3
60,848 + ABIE53_000052 0.21 +0.8
60,848 + ABIE53_000052 0.21 +0.2
60,849 - ABIE53_000052 0.21 +1.4
60,849 - ABIE53_000052 0.21 -1.8
60,849 - ABIE53_000052 0.21 -0.9
60,903 + ABIE53_000052 0.24 -0.4
60,903 + ABIE53_000052 0.24 -1.3
60,904 - ABIE53_000052 0.24 +1.8
60,904 - ABIE53_000052 0.24 +1.1
61,070 + ABIE53_000052 0.34 +0.1
61,070 + ABIE53_000052 0.34 -1.8
61,070 + ABIE53_000052 0.34 -1.4
61,071 - ABIE53_000052 0.34 -0.4
61,137 + ABIE53_000052 0.37 +0.4
61,137 + ABIE53_000052 0.37 -2.3
61,188 + ABIE53_000052 0.40 -0.5
61,188 + ABIE53_000052 0.40 -0.4
61,188 + ABIE53_000052 0.40 +0.0
61,189 - ABIE53_000052 0.40 -0.3
61,189 - ABIE53_000052 0.40 +1.0
61,189 - ABIE53_000052 0.40 +1.7
61,210 - ABIE53_000052 0.41 -0.9
61,308 + ABIE53_000052 0.47 +0.9
61,308 + ABIE53_000052 0.47 +1.4
61,308 + ABIE53_000052 0.47 -0.6
61,309 - ABIE53_000052 0.47 +0.8
61,309 - ABIE53_000052 0.47 -0.2
61,309 - ABIE53_000052 0.47 +2.4
61,309 - ABIE53_000052 0.47 +0.8
61,338 + ABIE53_000052 0.48 -1.2
61,338 + ABIE53_000052 0.48 +0.4
61,338 + ABIE53_000052 0.48 +0.8
61,389 + ABIE53_000052 0.51 -0.4
61,390 - ABIE53_000052 0.51 +1.4
61,437 + ABIE53_000052 0.54 -0.4
61,437 + ABIE53_000052 0.54 -1.5
61,437 + ABIE53_000052 0.54 -2.3
61,437 + ABIE53_000052 0.54 -0.5
61,674 + ABIE53_000052 0.67 -0.7
61,752 + ABIE53_000052 0.71 -2.3
61,752 + ABIE53_000052 0.71 -0.6
61,752 + ABIE53_000052 0.71 +0.9
61,752 + ABIE53_000052 0.71 +0.9
61,752 + ABIE53_000052 0.71 -0.3
61,753 - ABIE53_000052 0.71 -2.1
61,753 - ABIE53_000052 0.71 +0.1
61,756 + ABIE53_000052 0.71 +1.1
61,756 + ABIE53_000052 0.71 +0.6
61,756 + ABIE53_000052 0.71 +0.1
61,756 + ABIE53_000052 0.71 -0.3
61,756 + ABIE53_000052 0.71 +0.6
61,757 - ABIE53_000052 0.71 +2.7
61,757 - ABIE53_000052 0.71 -0.8
61,757 - ABIE53_000052 0.71 -2.1
61,757 - ABIE53_000052 0.71 -0.8
61,757 - ABIE53_000052 0.71 +3.0
61,901 + ABIE53_000052 0.79 +0.2
61,901 + ABIE53_000052 0.79 -1.9
61,901 + ABIE53_000052 0.79 -1.2
61,901 + ABIE53_000052 0.79 -0.9
61,901 + ABIE53_000052 0.79 -2.1
61,902 - ABIE53_000052 0.79 -0.2
61,902 - ABIE53_000052 0.79 +1.0
61,902 - ABIE53_000052 0.79 +3.0
61,902 - ABIE53_000052 0.79 +0.7
61,902 - ABIE53_000052 0.79 +0.4
61,902 - ABIE53_000052 0.79 -0.4
61,902 - ABIE53_000052 0.79 +1.2
61,902 - ABIE53_000052 0.79 -3.1
61,932 + ABIE53_000052 0.81 +0.3
61,933 - ABIE53_000052 0.81 -1.2
62,267 + -1.3
62,267 + +0.4
62,271 + +3.1
62,272 - +3.1
62,272 - +0.4
62,289 + +2.0
62,289 + -0.6
62,290 - +0.4
62,378 + -1.8
62,378 + -1.5
62,378 + -0.0
62,378 + -1.6
62,379 - -2.4
62,379 - -0.2
62,440 - ABIE53_000053 0.13 -1.8
62,707 - ABIE53_000053 0.36 -1.9
62,707 - ABIE53_000053 0.36 +0.4
62,736 + ABIE53_000053 0.38 -0.4
62,736 + ABIE53_000053 0.38 -0.4
62,769 + ABIE53_000053 0.41 +2.4
62,769 + ABIE53_000053 0.41 -2.0
62,769 + ABIE53_000053 0.41 -0.6
62,770 - ABIE53_000053 0.41 -0.0
62,770 - ABIE53_000053 0.41 -1.5
62,770 - ABIE53_000053 0.41 -5.0
62,909 + ABIE53_000053 0.53 -1.4
62,910 - ABIE53_000053 0.53 -0.4
62,910 - ABIE53_000053 0.53 +2.3
62,910 - ABIE53_000053 0.53 -1.5
62,910 - ABIE53_000053 0.53 +0.1
62,910 - ABIE53_000053 0.53 +0.1
62,910 - ABIE53_000053 0.53 -1.6
62,917 - ABIE53_000053 0.53 +0.6
63,033 + ABIE53_000053 0.63 -1.0
63,034 - ABIE53_000053 0.63 -0.7
63,072 + ABIE53_000053 0.66 -2.2
63,072 + ABIE53_000053 0.66 -1.0
63,072 + ABIE53_000053 0.66 -1.2
63,072 + ABIE53_000053 0.66 -1.7
63,073 - ABIE53_000053 0.67 -0.9
63,073 - ABIE53_000053 0.67 -1.7
63,073 - ABIE53_000053 0.67 +0.8
63,073 - ABIE53_000053 0.67 +1.5
63,102 + ABIE53_000053 0.69 -2.2
63,102 + ABIE53_000053 0.69 -0.8
63,102 + ABIE53_000053 0.69 -1.0
63,102 + ABIE53_000053 0.69 -2.0
63,103 - ABIE53_000053 0.69 -1.5
63,103 - ABIE53_000053 0.69 -3.8
63,103 - ABIE53_000053 0.69 -0.4
63,131 + ABIE53_000053 0.72 -1.9
63,131 + ABIE53_000053 0.72 -1.7

Or see this region's nucleotide sequence