Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2331

Experiment: MoLS4 minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2330 and DvMF_2331 are separated by 327 nucleotidesDvMF_2331 and DvMF_2332 are separated by 487 nucleotides DvMF_2330: DvMF_2330 - PP-loop domain protein (RefSeq), at 2,937,653 to 2,938,588 _2330 DvMF_2331: DvMF_2331 - hypothetical protein (RefSeq), at 2,938,916 to 2,939,167 _2331 DvMF_2332: DvMF_2332 - response regulator receiver protein (RefSeq), at 2,939,655 to 2,940,023 _2332 Position (kb) 2938 2939 2940Strain fitness (log2 ratio) -1 0 1at 2938.047 kb on - strand, within DvMF_2330at 2938.284 kb on - strand, within DvMF_2330at 2938.379 kb on - strand, within DvMF_2330at 2938.607 kb on + strandat 2938.651 kb on - strandat 2938.657 kb on - strandat 2938.783 kb on + strandat 2938.896 kb on + strandat 2938.904 kb on - strandat 2938.985 kb on - strand, within DvMF_2331at 2939.249 kb on + strandat 2939.716 kb on - strand, within DvMF_2332at 2939.883 kb on - strand, within DvMF_2332at 2939.957 kb on + strand, within DvMF_2332at 2939.987 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media
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2,938,047 - DvMF_2330 0.42 +0.7
2,938,284 - DvMF_2330 0.67 -0.6
2,938,379 - DvMF_2330 0.78 -0.7
2,938,607 + -0.6
2,938,651 - +0.1
2,938,657 - -1.2
2,938,783 + -1.6
2,938,896 + -1.1
2,938,904 - -0.4
2,938,985 - DvMF_2331 0.27 -0.4
2,939,249 + -0.1
2,939,716 - DvMF_2332 0.17 +0.4
2,939,883 - DvMF_2332 0.62 -0.5
2,939,957 + DvMF_2332 0.82 -1.0
2,939,987 + -0.4

Or see this region's nucleotide sequence