Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2180

Experiment: MoLS4 minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2179 and DvMF_2180 are separated by 391 nucleotidesDvMF_2180 and DvMF_2181 are separated by 568 nucleotides DvMF_2179: DvMF_2179 - Methyltransferase type 11 (RefSeq), at 2,717,625 to 2,718,539 _2179 DvMF_2180: DvMF_2180 - metallo-beta-lactamase/flavodoxin domain-containing protein (RefSeq), at 2,718,931 to 2,720,124 _2180 DvMF_2181: DvMF_2181 - heat shock protein Hsp20 (RefSeq), at 2,720,693 to 2,721,304 _2181 Position (kb) 2718 2719 2720 2721Strain fitness (log2 ratio) -3 -2 -1 0 1at 2718.216 kb on - strand, within DvMF_2179at 2718.375 kb on + strand, within DvMF_2179at 2718.721 kb on + strandat 2719.182 kb on + strand, within DvMF_2180at 2719.360 kb on - strand, within DvMF_2180at 2719.362 kb on - strand, within DvMF_2180at 2719.440 kb on + strand, within DvMF_2180at 2719.494 kb on - strand, within DvMF_2180at 2720.084 kb on - strandat 2720.087 kb on + strandat 2720.116 kb on - strandat 2720.213 kb on - strandat 2720.273 kb on + strandat 2720.443 kb on - strandat 2720.883 kb on + strand, within DvMF_2181at 2721.069 kb on - strand, within DvMF_2181

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media
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2,718,216 - DvMF_2179 0.65 -0.3
2,718,375 + DvMF_2179 0.82 -0.5
2,718,721 + +0.1
2,719,182 + DvMF_2180 0.21 +0.0
2,719,360 - DvMF_2180 0.36 -1.4
2,719,362 - DvMF_2180 0.36 -0.6
2,719,440 + DvMF_2180 0.43 -0.6
2,719,494 - DvMF_2180 0.47 -1.6
2,720,084 - -0.2
2,720,087 + -2.9
2,720,116 - -0.1
2,720,213 - -0.7
2,720,273 + -0.5
2,720,443 - -0.3
2,720,883 + DvMF_2181 0.31 -0.4
2,721,069 - DvMF_2181 0.61 +0.2

Or see this region's nucleotide sequence