Experiment: MoLS4 minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2007 and DvMF_2008 are separated by 72 nucleotides DvMF_2008 and DvMF_2009 are separated by 210 nucleotides DvMF_2009 and DvMF_2010 are separated by 243 nucleotides DvMF_2010 and DvMF_2011 are separated by 30 nucleotides
DvMF_2007: DvMF_2007 - hypothetical protein (RefSeq), at 2,487,516 to 2,487,932
_2007
DvMF_2008: DvMF_2008 - hypothetical protein (RefSeq), at 2,488,005 to 2,488,334
_2008
DvMF_2009: DvMF_2009 - flagellar basal body-associated protein FliL (RefSeq), at 2,488,545 to 2,489,330
_2009
DvMF_2010: DvMF_2010 - response regulator receiver protein (RefSeq), at 2,489,574 to 2,489,954
_2010
DvMF_2011: DvMF_2011 - RNA polymerase, sigma 28 subunit, FliA/WhiG (RefSeq), at 2,489,985 to 2,490,782
_2011
Position (kb)
2488
2489
2490 Strain fitness (log2 ratio)
-2
-1
0
1 at 2487.581 kb on + strand, within DvMF_2007 at 2487.589 kb on - strand, within DvMF_2007 at 2487.683 kb on - strand, within DvMF_2007 at 2487.695 kb on + strand, within DvMF_2007 at 2487.707 kb on + strand, within DvMF_2007 at 2487.820 kb on + strand, within DvMF_2007 at 2487.828 kb on - strand, within DvMF_2007 at 2487.833 kb on + strand, within DvMF_2007 at 2487.965 kb on + strand at 2488.002 kb on - strand at 2488.152 kb on + strand, within DvMF_2008 at 2488.460 kb on + strand at 2488.480 kb on - strand at 2488.679 kb on - strand, within DvMF_2009 at 2488.689 kb on + strand, within DvMF_2009 at 2488.806 kb on + strand, within DvMF_2009 at 2488.819 kb on - strand, within DvMF_2009 at 2488.860 kb on - strand, within DvMF_2009 at 2488.910 kb on - strand, within DvMF_2009 at 2489.098 kb on - strand, within DvMF_2009 at 2489.105 kb on - strand, within DvMF_2009 at 2489.317 kb on + strand at 2489.391 kb on - strand at 2489.624 kb on + strand, within DvMF_2010 at 2489.970 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 minimal media remove 2,487,581 + DvMF_2007 0.16 -0.6 2,487,589 - DvMF_2007 0.18 +0.6 2,487,683 - DvMF_2007 0.40 -0.5 2,487,695 + DvMF_2007 0.43 +1.6 2,487,707 + DvMF_2007 0.46 -1.6 2,487,820 + DvMF_2007 0.73 -0.2 2,487,828 - DvMF_2007 0.75 -0.3 2,487,833 + DvMF_2007 0.76 -0.1 2,487,965 + +0.5 2,488,002 - -0.4 2,488,152 + DvMF_2008 0.45 -0.7 2,488,460 + -0.5 2,488,480 - -0.7 2,488,679 - DvMF_2009 0.17 +0.7 2,488,689 + DvMF_2009 0.18 +0.8 2,488,806 + DvMF_2009 0.33 +0.8 2,488,819 - DvMF_2009 0.35 +0.6 2,488,860 - DvMF_2009 0.40 +0.8 2,488,910 - DvMF_2009 0.46 +0.5 2,489,098 - DvMF_2009 0.70 +0.8 2,489,105 - DvMF_2009 0.71 +0.3 2,489,317 + +0.3 2,489,391 - +0.0 2,489,624 + DvMF_2010 0.13 -2.0 2,489,970 - -0.2
Or see this region's nucleotide sequence