Experiment: MoLS4 minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1404 and DvMF_1405 are separated by 629 nucleotides DvMF_1405 and DvMF_1406 are separated by 9 nucleotides DvMF_1406 and DvMF_1407 are separated by 21 nucleotides
DvMF_1404: DvMF_1404 - helicase, RecD/TraA family (RefSeq), at 1,715,541 to 1,717,727
_1404
DvMF_1405: DvMF_1405 - hypothetical protein (RefSeq), at 1,718,357 to 1,718,824
_1405
DvMF_1406: DvMF_1406 - OmpA/MotB domain protein (RefSeq), at 1,718,834 to 1,719,418
_1406
DvMF_1407: DvMF_1407 - metal dependent phosphohydrolase (RefSeq), at 1,719,440 to 1,721,515
_1407
Position (kb)
1718
1719 Strain fitness (log2 ratio)
-1
0
1 at 1717.564 kb on - strand at 1717.623 kb on - strand at 1717.653 kb on - strand at 1717.747 kb on + strand at 1717.748 kb on + strand at 1718.426 kb on - strand, within DvMF_1405 at 1718.642 kb on + strand, within DvMF_1405 at 1718.709 kb on - strand, within DvMF_1405 at 1718.845 kb on + strand at 1718.865 kb on + strand at 1718.896 kb on - strand, within DvMF_1406 at 1718.958 kb on + strand, within DvMF_1406 at 1719.024 kb on + strand, within DvMF_1406 at 1719.470 kb on - strand at 1719.566 kb on - strand at 1719.598 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 minimal media remove 1,717,564 - -1.1 1,717,623 - +0.0 1,717,653 - -0.8 1,717,747 + +0.1 1,717,748 + +0.5 1,718,426 - DvMF_1405 0.15 -0.3 1,718,642 + DvMF_1405 0.61 -1.7 1,718,709 - DvMF_1405 0.75 -1.3 1,718,845 + -0.3 1,718,865 + -1.2 1,718,896 - DvMF_1406 0.11 -0.6 1,718,958 + DvMF_1406 0.21 -0.6 1,719,024 + DvMF_1406 0.32 -0.7 1,719,470 - -0.0 1,719,566 - -0.4 1,719,598 + -0.8
Or see this region's nucleotide sequence