Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1239

Experiment: MoLS4 minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1238 and DvMF_1239 are separated by 385 nucleotides DvMF_1238: DvMF_1238 - spermine synthase (RefSeq), at 1,525,635 to 1,527,209 _1238 DvMF_1239: DvMF_1239 - transcriptional regulator, TraR/DksA family (RefSeq), at 1,527,595 to 1,527,954 _1239 Position (kb) 1527 1528Strain fitness (log2 ratio) -2 -1 0 1 2at 1526.642 kb on - strand, within DvMF_1238at 1526.787 kb on - strand, within DvMF_1238at 1526.787 kb on - strand, within DvMF_1238at 1526.839 kb on + strand, within DvMF_1238at 1526.852 kb on - strand, within DvMF_1238at 1526.862 kb on - strand, within DvMF_1238at 1527.243 kb on - strandat 1527.492 kb on - strandat 1527.668 kb on - strand, within DvMF_1239at 1527.912 kb on + strand, within DvMF_1239at 1527.975 kb on + strandat 1528.107 kb on - strandat 1528.306 kb on - strandat 1528.343 kb on + strandat 1528.438 kb on - strandat 1528.633 kb on - strandat 1528.634 kb on - strandat 1528.688 kb on - strandat 1528.690 kb on + strandat 1528.755 kb on - strandat 1528.942 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media
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1,526,642 - DvMF_1238 0.64 -0.6
1,526,787 - DvMF_1238 0.73 -0.7
1,526,787 - DvMF_1238 0.73 -0.6
1,526,839 + DvMF_1238 0.76 -1.1
1,526,852 - DvMF_1238 0.77 -0.6
1,526,862 - DvMF_1238 0.78 -0.6
1,527,243 - -0.5
1,527,492 - +0.4
1,527,668 - DvMF_1239 0.20 +0.1
1,527,912 + DvMF_1239 0.88 +1.8
1,527,975 + -0.6
1,528,107 - -0.1
1,528,306 - -1.3
1,528,343 + -0.8
1,528,438 - -1.4
1,528,633 - -1.7
1,528,634 - -1.0
1,528,688 - -0.9
1,528,690 + +0.5
1,528,755 - -1.8
1,528,942 + -1.0

Or see this region's nucleotide sequence