Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0194

Experiment: MoLS4 minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0193 and DvMF_0194 are separated by 483 nucleotidesDvMF_0194 and DvMF_R0013 are separated by 362 nucleotidesDvMF_R0013 and DvMF_0195 are separated by 384 nucleotides DvMF_0193: DvMF_0193 - hypothetical protein (RefSeq), at 211,588 to 212,277 _0193 DvMF_0194: DvMF_0194 - protein of unknown function DUF161 (RefSeq), at 212,761 to 213,405 _0194 DvMF_R0013: DvMF_R0013 - tRNA-Pro (RefSeq), at 213,768 to 213,844 _R0013 DvMF_0195: DvMF_0195 - RNP-1 like RNA-binding protein (RefSeq), at 214,229 to 214,495 _0195 Position (kb) 212 213 214Strain fitness (log2 ratio) -1 0 1at 212.305 kb on + strandat 212.479 kb on - strandat 212.713 kb on - strandat 212.836 kb on - strand, within DvMF_0194at 212.853 kb on + strand, within DvMF_0194at 212.874 kb on - strand, within DvMF_0194at 212.900 kb on + strand, within DvMF_0194at 212.900 kb on + strand, within DvMF_0194at 212.908 kb on - strand, within DvMF_0194at 212.929 kb on - strand, within DvMF_0194

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media
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212,305 + -0.8
212,479 - +0.1
212,713 - -0.1
212,836 - DvMF_0194 0.12 +0.3
212,853 + DvMF_0194 0.14 -0.7
212,874 - DvMF_0194 0.18 +0.0
212,900 + DvMF_0194 0.22 +0.7
212,900 + DvMF_0194 0.22 +0.7
212,908 - DvMF_0194 0.23 -1.3
212,929 - DvMF_0194 0.26 -0.1

Or see this region's nucleotide sequence