Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0021

Experiment: MoLS4 minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0020 and DvMF_0021 are separated by 278 nucleotidesDvMF_0021 and DvMF_0022 are separated by 357 nucleotides DvMF_0020: DvMF_0020 - hypothetical protein (RefSeq), at 25,558 to 26,634 _0020 DvMF_0021: DvMF_0021 - stationary-phase survival protein SurE (RefSeq), at 26,913 to 27,722 _0021 DvMF_0022: DvMF_0022 - metal dependent phosphohydrolase (RefSeq), at 28,080 to 29,165 _0022 Position (kb) 26 27 28Strain fitness (log2 ratio) -2 -1 0 1at 25.917 kb on - strand, within DvMF_0020at 26.796 kb on + strandat 26.868 kb on - strandat 26.988 kb on - strandat 27.032 kb on + strand, within DvMF_0021at 27.239 kb on - strand, within DvMF_0021at 27.366 kb on - strand, within DvMF_0021at 27.522 kb on - strand, within DvMF_0021at 27.654 kb on - strandat 27.658 kb on + strandat 27.659 kb on - strandat 27.818 kb on - strandat 27.847 kb on - strandat 28.247 kb on - strand, within DvMF_0022at 28.247 kb on - strand, within DvMF_0022at 28.255 kb on + strand, within DvMF_0022at 28.277 kb on + strand, within DvMF_0022at 28.327 kb on - strand, within DvMF_0022at 28.338 kb on - strand, within DvMF_0022at 28.453 kb on - strand, within DvMF_0022at 28.581 kb on - strand, within DvMF_0022

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media
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25,917 - DvMF_0020 0.33 -0.5
26,796 + -0.2
26,868 - +0.0
26,988 - +0.3
27,032 + DvMF_0021 0.15 -0.7
27,239 - DvMF_0021 0.40 -1.0
27,366 - DvMF_0021 0.56 -0.3
27,522 - DvMF_0021 0.75 -0.7
27,654 - -0.3
27,658 + -0.3
27,659 - -0.6
27,818 - -0.1
27,847 - -0.7
28,247 - DvMF_0022 0.15 +0.3
28,247 - DvMF_0022 0.15 +0.7
28,255 + DvMF_0022 0.16 -2.3
28,277 + DvMF_0022 0.18 -1.3
28,327 - DvMF_0022 0.23 -2.7
28,338 - DvMF_0022 0.24 -0.5
28,453 - DvMF_0022 0.34 +0.2
28,581 - DvMF_0022 0.46 +0.3

Or see this region's nucleotide sequence