Experiment: Formate/Acetate-Sulfate (60/1-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trxB-1 and DVU0378 are separated by 18 nucleotides DVU0378 and DVU0379 are separated by 22 nucleotides DVU0379 and DVU0380 are separated by 43 nucleotides
DVU0377: trxB-1 - thioredoxin reductase (TIGR), at 427,507 to 428,424
trxB-1
DVU0378: DVU0378 - thioredoxin, putative (TIGR), at 428,443 to 428,757
DVU0378
DVU0379: DVU0379 - transcriptional regulator, putative (TIGR), at 428,780 to 429,457
DVU0379
DVU0380: DVU0380 - sulfatase, putative (TIGR), at 429,501 to 431,063
DVU0380
Position (kb) 428
429
430 Strain fitness (log2 ratio) -2
-1
0
1
2 at 427.785 kb on + strand, within trxB-1 at 427.795 kb on + strand, within trxB-1 at 427.950 kb on - strand, within trxB-1 at 427.951 kb on + strand, within trxB-1 at 428.116 kb on + strand, within trxB-1 at 428.143 kb on - strand, within trxB-1 at 428.210 kb on - strand, within trxB-1 at 428.285 kb on + strand, within trxB-1 at 428.568 kb on + strand, within DVU0378 at 428.568 kb on + strand, within DVU0378 at 428.651 kb on + strand, within DVU0378 at 428.664 kb on + strand, within DVU0378 at 428.786 kb on - strand at 428.940 kb on + strand, within DVU0379 at 428.949 kb on + strand, within DVU0379 at 428.957 kb on - strand, within DVU0379 at 429.022 kb on - strand, within DVU0379 at 429.077 kb on - strand, within DVU0379 at 429.227 kb on - strand, within DVU0379 at 429.272 kb on - strand, within DVU0379 at 429.317 kb on + strand, within DVU0379 at 429.402 kb on - strand at 429.411 kb on - strand at 429.500 kb on + strand at 429.628 kb on + strand at 429.671 kb on - strand, within DVU0380 at 429.859 kb on + strand, within DVU0380 at 429.890 kb on + strand, within DVU0380 at 429.890 kb on + strand, within DVU0380 at 429.890 kb on + strand, within DVU0380 at 429.890 kb on + strand, within DVU0380 at 429.890 kb on + strand, within DVU0380 at 429.890 kb on + strand, within DVU0380 at 429.991 kb on + strand, within DVU0380 at 430.026 kb on + strand, within DVU0380 at 430.082 kb on - strand, within DVU0380 at 430.087 kb on - strand, within DVU0380 at 430.115 kb on + strand, within DVU0380 at 430.115 kb on + strand, within DVU0380 at 430.123 kb on - strand, within DVU0380 at 430.123 kb on - strand, within DVU0380 at 430.123 kb on - strand, within DVU0380 at 430.123 kb on - strand, within DVU0380 at 430.123 kb on - strand, within DVU0380 at 430.137 kb on + strand, within DVU0380 at 430.137 kb on + strand, within DVU0380 at 430.169 kb on - strand, within DVU0380 at 430.298 kb on - strand, within DVU0380 at 430.368 kb on - strand, within DVU0380 at 430.417 kb on - strand, within DVU0380
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/1-30 mM) remove 427,785 + trxB-1 DVU0377 0.30 -0.1 427,795 + trxB-1 DVU0377 0.31 -0.6 427,950 - trxB-1 DVU0377 0.48 -0.2 427,951 + trxB-1 DVU0377 0.48 +0.5 428,116 + trxB-1 DVU0377 0.66 -0.4 428,143 - trxB-1 DVU0377 0.69 -0.5 428,210 - trxB-1 DVU0377 0.77 +0.0 428,285 + trxB-1 DVU0377 0.85 -0.6 428,568 + DVU0378 0.40 -0.0 428,568 + DVU0378 0.40 +0.4 428,651 + DVU0378 0.66 +0.4 428,664 + DVU0378 0.70 -0.5 428,786 - +0.1 428,940 + DVU0379 0.24 -0.7 428,949 + DVU0379 0.25 -0.2 428,957 - DVU0379 0.26 -1.3 429,022 - DVU0379 0.36 -1.0 429,077 - DVU0379 0.44 -0.4 429,227 - DVU0379 0.66 -0.8 429,272 - DVU0379 0.73 -0.3 429,317 + DVU0379 0.79 -0.3 429,402 - +0.2 429,411 - -0.3 429,500 + -1.3 429,628 + -0.4 429,671 - DVU0380 0.11 -0.6 429,859 + DVU0380 0.23 -0.2 429,890 + DVU0380 0.25 +0.1 429,890 + DVU0380 0.25 +0.2 429,890 + DVU0380 0.25 +0.2 429,890 + DVU0380 0.25 -0.2 429,890 + DVU0380 0.25 -0.1 429,890 + DVU0380 0.25 +0.9 429,991 + DVU0380 0.31 -1.6 430,026 + DVU0380 0.34 +1.0 430,082 - DVU0380 0.37 -0.3 430,087 - DVU0380 0.37 -0.1 430,115 + DVU0380 0.39 +0.3 430,115 + DVU0380 0.39 -2.1 430,123 - DVU0380 0.40 +1.9 430,123 - DVU0380 0.40 -0.0 430,123 - DVU0380 0.40 +0.5 430,123 - DVU0380 0.40 +0.1 430,123 - DVU0380 0.40 -0.6 430,137 + DVU0380 0.41 +0.0 430,137 + DVU0380 0.41 +0.8 430,169 - DVU0380 0.43 -0.3 430,298 - DVU0380 0.51 -0.0 430,368 - DVU0380 0.55 +0.7 430,417 - DVU0380 0.59 -0.0
Or see this region's nucleotide sequence