Experiment: Formate/Acetate-Sulfate (60/1-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2286 and DVU2287 are separated by 3 nucleotides DVU2287 and DVU2288 are separated by 12 nucleotides DVU2288 and b2488 are separated by 1 nucleotides
DVU2286: DVU2286 - hydrogenase, CooM subunit, putative (TIGR), at 2,377,289 to 2,381,050
DVU2286
DVU2287: DVU2287 - hydrogenase, CooK subunit, selenocysteine-containing, putative (TIGR), at 2,381,054 to 2,382,019
DVU2287
DVU2288: DVU2288 - hydrogenase, CooL subunit, putative (TIGR), at 2,382,032 to 2,382,466
DVU2288
DVU2289: b2488 - hydrogenase, CooX subunit, putative (TIGR), at 2,382,468 to 2,383,103
b2488
Position (kb)
2381
2382
2383 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2380.060 kb on + strand, within DVU2286 at 2380.068 kb on - strand, within DVU2286 at 2380.126 kb on - strand, within DVU2286 at 2380.254 kb on - strand, within DVU2286 at 2380.259 kb on - strand, within DVU2286 at 2380.270 kb on + strand, within DVU2286 at 2380.280 kb on + strand, within DVU2286 at 2380.359 kb on - strand, within DVU2286 at 2380.554 kb on + strand, within DVU2286 at 2380.635 kb on + strand, within DVU2286 at 2381.042 kb on - strand at 2381.044 kb on + strand at 2381.131 kb on + strand at 2381.139 kb on - strand at 2381.346 kb on - strand, within DVU2287 at 2381.490 kb on - strand, within DVU2287 at 2381.605 kb on + strand, within DVU2287 at 2382.243 kb on - strand, within DVU2288 at 2382.750 kb on - strand, within b2488 at 2382.926 kb on + strand, within b2488
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/1-30 mM) remove 2,380,060 + DVU2286 0.74 +0.0 2,380,068 - DVU2286 0.74 -0.5 2,380,126 - DVU2286 0.75 -1.9 2,380,254 - DVU2286 0.79 +0.7 2,380,259 - DVU2286 0.79 +1.9 2,380,270 + DVU2286 0.79 +0.6 2,380,280 + DVU2286 0.80 +0.7 2,380,359 - DVU2286 0.82 +1.5 2,380,554 + DVU2286 0.87 +1.7 2,380,635 + DVU2286 0.89 +2.5 2,381,042 - -0.3 2,381,044 + +0.3 2,381,131 + -0.6 2,381,139 - -0.3 2,381,346 - DVU2287 0.30 -0.2 2,381,490 - DVU2287 0.45 -0.3 2,381,605 + DVU2287 0.57 -0.8 2,382,243 - DVU2288 0.49 +0.4 2,382,750 - b2488 DVU2289 0.44 -0.5 2,382,926 + b2488 DVU2289 0.72 +0.0
Or see this region's nucleotide sequence