Experiment: Parabanic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6064 and Pf6N2E2_6065 are separated by 336 nucleotides Pf6N2E2_6065 and Pf6N2E2_6066 are separated by 0 nucleotides Pf6N2E2_6066 and Pf6N2E2_6067 overlap by 1 nucleotides
Pf6N2E2_6064 - 2-methylaconitate isomerase, at 6,885,726 to 6,886,919
_6064
Pf6N2E2_6065 - ABC transporter in pyoverdin gene cluster, periplasmic component, at 6,887,256 to 6,888,149
_6065
Pf6N2E2_6066 - ABC transporter in pyoverdin gene cluster, permease component, at 6,888,150 to 6,889,049
_6066
Pf6N2E2_6067 - ABC transporter in pyoverdin gene cluster, ATP-binding component, at 6,889,049 to 6,889,801
_6067
Position (kb)
6887
6888
6889 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6886.587 kb on + strand, within Pf6N2E2_6064 at 6886.587 kb on + strand, within Pf6N2E2_6064 at 6886.588 kb on - strand, within Pf6N2E2_6064 at 6886.588 kb on - strand, within Pf6N2E2_6064 at 6886.588 kb on - strand, within Pf6N2E2_6064 at 6886.588 kb on - strand, within Pf6N2E2_6064 at 6886.633 kb on + strand, within Pf6N2E2_6064 at 6886.633 kb on + strand, within Pf6N2E2_6064 at 6886.634 kb on - strand, within Pf6N2E2_6064 at 6886.634 kb on - strand, within Pf6N2E2_6064 at 6886.634 kb on - strand, within Pf6N2E2_6064 at 6886.634 kb on - strand, within Pf6N2E2_6064 at 6887.105 kb on - strand at 6887.199 kb on + strand at 6887.947 kb on + strand, within Pf6N2E2_6065 at 6888.038 kb on - strand, within Pf6N2E2_6065 at 6888.151 kb on + strand at 6888.152 kb on - strand at 6888.152 kb on - strand at 6888.458 kb on - strand, within Pf6N2E2_6066 at 6888.458 kb on - strand, within Pf6N2E2_6066 at 6888.532 kb on + strand, within Pf6N2E2_6066 at 6888.533 kb on - strand, within Pf6N2E2_6066 at 6888.533 kb on - strand, within Pf6N2E2_6066 at 6888.533 kb on - strand, within Pf6N2E2_6066 at 6888.708 kb on + strand, within Pf6N2E2_6066 at 6888.709 kb on - strand, within Pf6N2E2_6066 at 6888.709 kb on - strand, within Pf6N2E2_6066 at 6888.709 kb on - strand, within Pf6N2E2_6066 at 6888.755 kb on - strand, within Pf6N2E2_6066 at 6888.815 kb on - strand, within Pf6N2E2_6066 at 6888.904 kb on - strand, within Pf6N2E2_6066 at 6888.904 kb on - strand, within Pf6N2E2_6066 at 6889.042 kb on + strand at 6889.042 kb on + strand at 6889.042 kb on + strand at 6889.042 kb on + strand at 6889.043 kb on - strand at 6889.043 kb on - strand at 6889.043 kb on - strand at 6889.043 kb on - strand at 6889.043 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parabanic Acid (N) remove 6,886,587 + Pf6N2E2_6064 0.72 +2.2 6,886,587 + Pf6N2E2_6064 0.72 -0.1 6,886,588 - Pf6N2E2_6064 0.72 +0.3 6,886,588 - Pf6N2E2_6064 0.72 -0.4 6,886,588 - Pf6N2E2_6064 0.72 -0.8 6,886,588 - Pf6N2E2_6064 0.72 +1.0 6,886,633 + Pf6N2E2_6064 0.76 -0.1 6,886,633 + Pf6N2E2_6064 0.76 +0.5 6,886,634 - Pf6N2E2_6064 0.76 +0.4 6,886,634 - Pf6N2E2_6064 0.76 +0.4 6,886,634 - Pf6N2E2_6064 0.76 +0.8 6,886,634 - Pf6N2E2_6064 0.76 -1.8 6,887,105 - -0.4 6,887,199 + -0.4 6,887,947 + Pf6N2E2_6065 0.77 -1.7 6,888,038 - Pf6N2E2_6065 0.87 -0.4 6,888,151 + -1.7 6,888,152 - -0.3 6,888,152 - -0.9 6,888,458 - Pf6N2E2_6066 0.34 +1.0 6,888,458 - Pf6N2E2_6066 0.34 +0.7 6,888,532 + Pf6N2E2_6066 0.42 +0.2 6,888,533 - Pf6N2E2_6066 0.43 +0.8 6,888,533 - Pf6N2E2_6066 0.43 -0.6 6,888,533 - Pf6N2E2_6066 0.43 +0.5 6,888,708 + Pf6N2E2_6066 0.62 +1.3 6,888,709 - Pf6N2E2_6066 0.62 -1.8 6,888,709 - Pf6N2E2_6066 0.62 +0.5 6,888,709 - Pf6N2E2_6066 0.62 +0.3 6,888,755 - Pf6N2E2_6066 0.67 -0.0 6,888,815 - Pf6N2E2_6066 0.74 +0.9 6,888,904 - Pf6N2E2_6066 0.84 +0.3 6,888,904 - Pf6N2E2_6066 0.84 +0.6 6,889,042 + +0.4 6,889,042 + +0.1 6,889,042 + +0.4 6,889,042 + -0.0 6,889,043 - -1.4 6,889,043 - +0.3 6,889,043 - +0.6 6,889,043 - -0.1 6,889,043 - -0.4
Or see this region's nucleotide sequence