Experiment: m.b. Vanillin 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2113 and HP15_2114 are separated by 48 nucleotides HP15_2114 and HP15_2115 are separated by 71 nucleotides HP15_2115 and HP15_2116 are separated by 12 nucleotides HP15_2116 and HP15_2117 are separated by 72 nucleotides HP15_2117 and HP15_2118 are separated by 19 nucleotides
HP15_2113: HP15_2113 - heavy-metal transporting P-type ATPase, at 2,211,965 to 2,214,412
_2113
HP15_2114: HP15_2114 - cytochrome oxidase maturation protein, cbb3-type, at 2,214,461 to 2,214,709
_2114
HP15_2115: HP15_2115 - conserved hypothetical protein, membrane, at 2,214,781 to 2,215,395
_2115
HP15_2116: HP15_2116 - PP-loop domain protein, at 2,215,408 to 2,216,322
_2116
HP15_2117: HP15_2117 - transcriptional regulator, TetR family protein, at 2,216,395 to 2,217,039
_2117
HP15_2118: HP15_2118 - heat shock protein DnaJ domain protein, at 2,217,059 to 2,217,733
_2118
Position (kb)
2215
2216
2217 Strain fitness (log2 ratio)
-1
0
1 at 2215.480 kb on - strand at 2215.492 kb on + strand at 2215.846 kb on - strand, within HP15_2116 at 2215.871 kb on - strand, within HP15_2116 at 2216.111 kb on - strand, within HP15_2116 at 2216.116 kb on - strand, within HP15_2116 at 2216.672 kb on - strand, within HP15_2117 at 2216.810 kb on - strand, within HP15_2117 at 2216.915 kb on + strand, within HP15_2117 at 2217.000 kb on + strand at 2217.000 kb on + strand at 2217.056 kb on + strand at 2217.064 kb on - strand at 2217.064 kb on - strand at 2217.167 kb on - strand, within HP15_2118 at 2217.214 kb on + strand, within HP15_2118
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vanillin 1.25 mM remove 2,215,480 - +0.2 2,215,492 + +0.2 2,215,846 - HP15_2116 0.48 -0.0 2,215,871 - HP15_2116 0.51 -0.7 2,216,111 - HP15_2116 0.77 +0.1 2,216,116 - HP15_2116 0.77 -0.5 2,216,672 - HP15_2117 0.43 -0.7 2,216,810 - HP15_2117 0.64 +1.3 2,216,915 + HP15_2117 0.81 +0.3 2,217,000 + -0.9 2,217,000 + +1.4 2,217,056 + +0.8 2,217,064 - -0.9 2,217,064 - -0.3 2,217,167 - HP15_2118 0.16 +1.0 2,217,214 + HP15_2118 0.23 +0.9
Or see this region's nucleotide sequence