Experiment: m.b. Vanillin 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_183 and HP15_184 are separated by 85 nucleotides HP15_184 and HP15_185 are separated by 203 nucleotides HP15_185 and HP15_186 overlap by 14 nucleotides
HP15_183: HP15_183 - copper-resistance protein, CopA family, at 173,011 to 174,771
_183
HP15_184: HP15_184 - copper-binding protein, at 174,857 to 175,384
_184
HP15_185: HP15_185 - two component transcriptional regulator, winged helix family, at 175,588 to 176,253
_185
HP15_186: HP15_186 - two-component sensor, at 176,240 to 177,595
_186
Position (kb) 175
176
177 Strain fitness (log2 ratio) -2
-1
0
1
2 at 174.600 kb on - strand at 174.602 kb on + strand at 174.632 kb on + strand at 174.700 kb on + strand at 174.708 kb on - strand at 174.708 kb on - strand at 174.718 kb on + strand at 174.752 kb on + strand at 174.774 kb on + strand at 174.887 kb on + strand at 174.998 kb on + strand, within HP15_184 at 175.061 kb on + strand, within HP15_184 at 175.108 kb on - strand, within HP15_184 at 175.113 kb on - strand, within HP15_184 at 175.120 kb on + strand, within HP15_184 at 175.171 kb on - strand, within HP15_184 at 175.203 kb on - strand, within HP15_184 at 175.216 kb on + strand, within HP15_184 at 175.229 kb on + strand, within HP15_184 at 175.253 kb on - strand, within HP15_184 at 175.277 kb on - strand, within HP15_184 at 175.440 kb on - strand at 175.558 kb on - strand at 175.581 kb on - strand at 175.664 kb on + strand, within HP15_185 at 175.677 kb on - strand, within HP15_185 at 175.716 kb on + strand, within HP15_185 at 175.763 kb on + strand, within HP15_185 at 175.771 kb on - strand, within HP15_185 at 175.848 kb on + strand, within HP15_185 at 175.857 kb on + strand, within HP15_185 at 175.857 kb on - strand, within HP15_185 at 175.865 kb on - strand, within HP15_185 at 175.881 kb on - strand, within HP15_185 at 175.920 kb on + strand, within HP15_185 at 175.960 kb on - strand, within HP15_185 at 176.037 kb on - strand, within HP15_185 at 176.037 kb on - strand, within HP15_185 at 176.037 kb on - strand, within HP15_185 at 176.043 kb on - strand, within HP15_185 at 176.123 kb on + strand, within HP15_185 at 176.265 kb on - strand at 176.348 kb on - strand at 176.435 kb on + strand, within HP15_186 at 176.443 kb on - strand, within HP15_186 at 176.443 kb on - strand, within HP15_186 at 176.443 kb on - strand, within HP15_186 at 176.720 kb on - strand, within HP15_186 at 176.764 kb on - strand, within HP15_186 at 176.787 kb on + strand, within HP15_186 at 177.136 kb on - strand, within HP15_186 at 177.178 kb on + strand, within HP15_186 at 177.221 kb on - strand, within HP15_186 at 177.235 kb on + strand, within HP15_186
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vanillin 1.25 mM remove 174,600 - -2.4 174,602 + +0.3 174,632 + +0.4 174,700 + +0.3 174,708 - +0.1 174,708 - -0.2 174,718 + -0.1 174,752 + +0.1 174,774 + -0.2 174,887 + +0.4 174,998 + HP15_184 0.27 +0.4 175,061 + HP15_184 0.39 +0.3 175,108 - HP15_184 0.48 -0.8 175,113 - HP15_184 0.48 -0.1 175,120 + HP15_184 0.50 +0.0 175,171 - HP15_184 0.59 +0.4 175,203 - HP15_184 0.66 -0.4 175,216 + HP15_184 0.68 +0.0 175,229 + HP15_184 0.70 +0.2 175,253 - HP15_184 0.75 +0.0 175,277 - HP15_184 0.80 +0.1 175,440 - +0.1 175,558 - +0.1 175,581 - -0.1 175,664 + HP15_185 0.11 -0.0 175,677 - HP15_185 0.13 -0.0 175,716 + HP15_185 0.19 +1.9 175,763 + HP15_185 0.26 +0.3 175,771 - HP15_185 0.27 -0.1 175,848 + HP15_185 0.39 +0.2 175,857 + HP15_185 0.40 +0.5 175,857 - HP15_185 0.40 -0.2 175,865 - HP15_185 0.42 +0.3 175,881 - HP15_185 0.44 +0.2 175,920 + HP15_185 0.50 +0.4 175,960 - HP15_185 0.56 +0.6 176,037 - HP15_185 0.67 +0.3 176,037 - HP15_185 0.67 +0.3 176,037 - HP15_185 0.67 -0.7 176,043 - HP15_185 0.68 -0.7 176,123 + HP15_185 0.80 -0.2 176,265 - +0.3 176,348 - +0.4 176,435 + HP15_186 0.14 +0.4 176,443 - HP15_186 0.15 +0.1 176,443 - HP15_186 0.15 +0.2 176,443 - HP15_186 0.15 -0.6 176,720 - HP15_186 0.35 +0.1 176,764 - HP15_186 0.39 -0.3 176,787 + HP15_186 0.40 +0.0 177,136 - HP15_186 0.66 +0.9 177,178 + HP15_186 0.69 +0.5 177,221 - HP15_186 0.72 +0.2 177,235 + HP15_186 0.73 -0.2
Or see this region's nucleotide sequence