Experiment: m.b. Vanillin 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1774 and HP15_1775 are separated by 23 nucleotides HP15_1775 and HP15_1776 are separated by 81 nucleotides HP15_1776 and HP15_1777 are separated by 18 nucleotides HP15_1777 and HP15_1778 are separated by 9 nucleotides
HP15_1774: HP15_1774 - conserved hypothetical protein, membrane, at 1,871,550 to 1,872,071
_1774
HP15_1775: HP15_1775 - conserved hypothetical protein, at 1,872,095 to 1,872,808
_1775
HP15_1776: HP15_1776 - exonuclease III, at 1,872,890 to 1,873,702
_1776
HP15_1777: HP15_1777 - transcriptional regulator, TetR family, at 1,873,721 to 1,874,350
_1777
HP15_1778: HP15_1778 - poly(hydroxyalkanoate) granule-associated protein, at 1,874,360 to 1,874,773
_1778
Position (kb)
1872
1873
1874 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1872.006 kb on - strand, within HP15_1774 at 1872.221 kb on + strand, within HP15_1775 at 1872.378 kb on - strand, within HP15_1775 at 1872.620 kb on + strand, within HP15_1775 at 1872.698 kb on - strand, within HP15_1775 at 1873.080 kb on + strand, within HP15_1776 at 1873.139 kb on + strand, within HP15_1776 at 1873.172 kb on + strand, within HP15_1776 at 1873.280 kb on + strand, within HP15_1776 at 1873.336 kb on - strand, within HP15_1776 at 1873.532 kb on - strand, within HP15_1776 at 1873.558 kb on + strand, within HP15_1776 at 1873.580 kb on + strand, within HP15_1776 at 1873.600 kb on - strand, within HP15_1776 at 1873.631 kb on - strand at 1873.771 kb on + strand at 1873.779 kb on - strand at 1873.886 kb on + strand, within HP15_1777 at 1874.262 kb on + strand, within HP15_1777 at 1874.290 kb on + strand at 1874.295 kb on + strand at 1874.622 kb on - strand, within HP15_1778 at 1874.699 kb on - strand, within HP15_1778
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vanillin 1.25 mM remove 1,872,006 - HP15_1774 0.87 -0.7 1,872,221 + HP15_1775 0.18 -0.2 1,872,378 - HP15_1775 0.40 -1.9 1,872,620 + HP15_1775 0.74 -0.8 1,872,698 - HP15_1775 0.84 -0.2 1,873,080 + HP15_1776 0.23 -0.9 1,873,139 + HP15_1776 0.31 -0.1 1,873,172 + HP15_1776 0.35 +0.1 1,873,280 + HP15_1776 0.48 -0.5 1,873,336 - HP15_1776 0.55 -1.3 1,873,532 - HP15_1776 0.79 -0.4 1,873,558 + HP15_1776 0.82 -0.5 1,873,580 + HP15_1776 0.85 -0.1 1,873,600 - HP15_1776 0.87 +0.9 1,873,631 - -0.2 1,873,771 + -1.1 1,873,779 - -0.8 1,873,886 + HP15_1777 0.26 -0.0 1,874,262 + HP15_1777 0.86 -0.1 1,874,290 + +0.8 1,874,295 + -0.3 1,874,622 - HP15_1778 0.63 +2.1 1,874,699 - HP15_1778 0.82 -0.4
Or see this region's nucleotide sequence