Experiment: Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24950 and BWI76_RS24955 are separated by 55 nucleotides BWI76_RS24955 and BWI76_RS24960 overlap by 14 nucleotides BWI76_RS24960 and BWI76_RS24965 overlap by 7 nucleotides BWI76_RS24965 and BWI76_RS24970 are separated by 221 nucleotides
BWI76_RS24950: BWI76_RS24950 - hypothetical protein, at 5,197,656 to 5,198,099
_RS24950
BWI76_RS24955: BWI76_RS24955 - hypothetical protein, at 5,198,155 to 5,198,439
_RS24955
BWI76_RS24960: BWI76_RS24960 - N-acetyltransferase, at 5,198,426 to 5,198,929
_RS24960
BWI76_RS24965: BWI76_RS24965 - SCP2 domain-containing protein, at 5,198,923 to 5,199,447
_RS24965
BWI76_RS24970: BWI76_RS24970 - peptidase U32, at 5,199,669 to 5,200,664
_RS24970
Position (kb) 5198
5199
5200 Strain fitness (log2 ratio) -2
-1
0
1 at 5198.105 kb on - strand at 5198.121 kb on + strand at 5198.124 kb on + strand at 5198.129 kb on + strand at 5198.129 kb on + strand at 5198.137 kb on - strand at 5198.231 kb on + strand, within BWI76_RS24955 at 5198.344 kb on - strand, within BWI76_RS24955 at 5198.656 kb on + strand, within BWI76_RS24960 at 5198.709 kb on + strand, within BWI76_RS24960 at 5198.750 kb on + strand, within BWI76_RS24960 at 5198.771 kb on + strand, within BWI76_RS24960 at 5198.796 kb on + strand, within BWI76_RS24960 at 5199.021 kb on - strand, within BWI76_RS24965 at 5199.072 kb on + strand, within BWI76_RS24965 at 5199.380 kb on + strand, within BWI76_RS24965 at 5199.388 kb on - strand, within BWI76_RS24965 at 5199.416 kb on - strand at 5199.564 kb on + strand at 5199.685 kb on - strand at 5199.826 kb on - strand, within BWI76_RS24970 at 5199.867 kb on + strand, within BWI76_RS24970 at 5199.869 kb on - strand, within BWI76_RS24970 at 5200.138 kb on - strand, within BWI76_RS24970 at 5200.429 kb on + strand, within BWI76_RS24970 at 5200.437 kb on - strand, within BWI76_RS24970 at 5200.437 kb on - strand, within BWI76_RS24970
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 5,198,105 - -1.2 5,198,121 + -0.8 5,198,124 + -0.2 5,198,129 + +0.0 5,198,129 + -0.3 5,198,137 - -1.0 5,198,231 + BWI76_RS24955 0.27 +0.3 5,198,344 - BWI76_RS24955 0.66 -1.4 5,198,656 + BWI76_RS24960 0.46 -2.4 5,198,709 + BWI76_RS24960 0.56 +0.4 5,198,750 + BWI76_RS24960 0.64 -1.3 5,198,771 + BWI76_RS24960 0.68 -0.7 5,198,796 + BWI76_RS24960 0.73 -1.6 5,199,021 - BWI76_RS24965 0.19 -0.7 5,199,072 + BWI76_RS24965 0.28 -1.3 5,199,380 + BWI76_RS24965 0.87 -1.0 5,199,388 - BWI76_RS24965 0.89 -0.6 5,199,416 - +0.7 5,199,564 + -0.9 5,199,685 - +0.4 5,199,826 - BWI76_RS24970 0.16 -0.5 5,199,867 + BWI76_RS24970 0.20 -1.6 5,199,869 - BWI76_RS24970 0.20 +0.0 5,200,138 - BWI76_RS24970 0.47 -1.2 5,200,429 + BWI76_RS24970 0.76 -0.4 5,200,437 - BWI76_RS24970 0.77 -0.4 5,200,437 - BWI76_RS24970 0.77 +0.5
Or see this region's nucleotide sequence