Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17460

Experiment: Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17450 and BWI76_RS17455 are separated by 43 nucleotidesBWI76_RS17455 and BWI76_RS17460 overlap by 49 nucleotidesBWI76_RS17460 and BWI76_RS17465 are separated by 250 nucleotides BWI76_RS17450: BWI76_RS17450 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 3,618,784 to 3,619,635 _RS17450 BWI76_RS17455: BWI76_RS17455 - hypothetical protein, at 3,619,679 to 3,619,867 _RS17455 BWI76_RS17460: BWI76_RS17460 - ribose-phosphate pyrophosphokinase, at 3,619,819 to 3,620,766 _RS17460 BWI76_RS17465: BWI76_RS17465 - C4-dicarboxylic acid transporter DauA, at 3,621,017 to 3,622,696 _RS17465 Position (kb) 3619 3620 3621Strain fitness (log2 ratio) -1 0 1at 3620.880 kb on + strandat 3620.909 kb on - strandat 3621.200 kb on + strand, within BWI76_RS17465at 3621.200 kb on + strand, within BWI76_RS17465at 3621.200 kb on + strand, within BWI76_RS17465at 3621.208 kb on - strand, within BWI76_RS17465

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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3,620,880 + +1.4
3,620,909 - -0.1
3,621,200 + BWI76_RS17465 0.11 -0.3
3,621,200 + BWI76_RS17465 0.11 -0.4
3,621,200 + BWI76_RS17465 0.11 +0.2
3,621,208 - BWI76_RS17465 0.11 -0.3

Or see this region's nucleotide sequence