Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11380

Experiment: Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11370 and BWI76_RS11375 overlap by 4 nucleotidesBWI76_RS11375 and BWI76_RS11380 overlap by 4 nucleotidesBWI76_RS11380 and BWI76_RS11385 are separated by 58 nucleotides BWI76_RS11370: BWI76_RS11370 - iron-dicitrate transporter subunit FecD, at 2,396,149 to 2,397,102 _RS11370 BWI76_RS11375: BWI76_RS11375 - iron-dicitrate transporter permease subunit, at 2,397,099 to 2,398,097 _RS11375 BWI76_RS11380: BWI76_RS11380 - iron-dicitrate transporter substrate-binding subunit, at 2,398,094 to 2,398,996 _RS11380 BWI76_RS11385: BWI76_RS11385 - TonB-dependent siderophore receptor, at 2,399,055 to 2,401,385 _RS11385 Position (kb) 2398 2399Strain fitness (log2 ratio) -2 -1 0 1 2at 2397.136 kb on + strandat 2397.144 kb on - strandat 2397.183 kb on + strandat 2397.191 kb on - strandat 2397.264 kb on + strand, within BWI76_RS11375at 2397.605 kb on - strand, within BWI76_RS11375at 2397.760 kb on + strand, within BWI76_RS11375at 2398.281 kb on + strand, within BWI76_RS11380at 2398.328 kb on - strand, within BWI76_RS11380at 2398.416 kb on - strand, within BWI76_RS11380at 2398.872 kb on - strand, within BWI76_RS11380at 2398.883 kb on - strand, within BWI76_RS11380at 2398.908 kb on - strandat 2398.958 kb on - strandat 2399.078 kb on + strandat 2399.208 kb on + strandat 2399.789 kb on - strand, within BWI76_RS11385at 2399.789 kb on - strand, within BWI76_RS11385at 2399.853 kb on + strand, within BWI76_RS11385at 2399.885 kb on + strand, within BWI76_RS11385

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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2,397,136 + -1.0
2,397,144 - -0.6
2,397,183 + -1.1
2,397,191 - +0.3
2,397,264 + BWI76_RS11375 0.17 -0.4
2,397,605 - BWI76_RS11375 0.51 -0.1
2,397,760 + BWI76_RS11375 0.66 -0.8
2,398,281 + BWI76_RS11380 0.21 -2.0
2,398,328 - BWI76_RS11380 0.26 -1.4
2,398,416 - BWI76_RS11380 0.36 -1.0
2,398,872 - BWI76_RS11380 0.86 -0.1
2,398,883 - BWI76_RS11380 0.87 -1.4
2,398,908 - -1.0
2,398,958 - -0.3
2,399,078 + -1.1
2,399,208 + -0.7
2,399,789 - BWI76_RS11385 0.31 +2.4
2,399,789 - BWI76_RS11385 0.31 -0.1
2,399,853 + BWI76_RS11385 0.34 -2.2
2,399,885 + BWI76_RS11385 0.36 -0.3

Or see this region's nucleotide sequence