Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10295

Experiment: Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10290 and BWI76_RS10295 are separated by 51 nucleotidesBWI76_RS10295 and BWI76_RS10300 are separated by 164 nucleotides BWI76_RS10290: BWI76_RS10290 - transcriptional regulator, at 2,178,829 to 2,179,725 _RS10290 BWI76_RS10295: BWI76_RS10295 - short chain dehydrogenase/reductase family oxidoreductase, at 2,179,777 to 2,180,562 _RS10295 BWI76_RS10300: BWI76_RS10300 - MFS transporter, at 2,180,727 to 2,182,163 _RS10300 Position (kb) 2179 2180 2181Strain fitness (log2 ratio) -3 -2 -1 0 1at 2178.842 kb on - strandat 2179.198 kb on + strand, within BWI76_RS10290at 2179.198 kb on + strand, within BWI76_RS10290at 2179.206 kb on - strand, within BWI76_RS10290at 2179.206 kb on - strand, within BWI76_RS10290at 2179.255 kb on + strand, within BWI76_RS10290at 2179.499 kb on + strand, within BWI76_RS10290at 2179.507 kb on - strandat 2179.520 kb on + strandat 2179.622 kb on + strand, within BWI76_RS10290at 2180.288 kb on + strand, within BWI76_RS10295at 2180.309 kb on + strand, within BWI76_RS10295at 2180.453 kb on - strand, within BWI76_RS10295at 2180.466 kb on - strand, within BWI76_RS10295at 2180.807 kb on + strandat 2180.838 kb on + strandat 2181.111 kb on + strand, within BWI76_RS10300at 2181.390 kb on + strand, within BWI76_RS10300at 2181.390 kb on + strand, within BWI76_RS10300at 2181.508 kb on - strand, within BWI76_RS10300at 2181.516 kb on + strand, within BWI76_RS10300

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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2,178,842 - -0.3
2,179,198 + BWI76_RS10290 0.41 -0.3
2,179,198 + BWI76_RS10290 0.41 +0.4
2,179,206 - BWI76_RS10290 0.42 +0.7
2,179,206 - BWI76_RS10290 0.42 -2.0
2,179,255 + BWI76_RS10290 0.47 -0.4
2,179,499 + BWI76_RS10290 0.75 +0.6
2,179,507 - +0.6
2,179,520 + +0.7
2,179,622 + BWI76_RS10290 0.88 -0.8
2,180,288 + BWI76_RS10295 0.65 +0.1
2,180,309 + BWI76_RS10295 0.68 -1.0
2,180,453 - BWI76_RS10295 0.86 -1.4
2,180,466 - BWI76_RS10295 0.88 -2.9
2,180,807 + +0.4
2,180,838 + -0.6
2,181,111 + BWI76_RS10300 0.27 -0.8
2,181,390 + BWI76_RS10300 0.46 -0.1
2,181,390 + BWI76_RS10300 0.46 -0.7
2,181,508 - BWI76_RS10300 0.54 -0.2
2,181,516 + BWI76_RS10300 0.55 -0.0

Or see this region's nucleotide sequence