Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06785

Experiment: Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06780 and BWI76_RS06785 are separated by 142 nucleotidesBWI76_RS06785 and BWI76_RS06790 are separated by 130 nucleotides BWI76_RS06780: BWI76_RS06780 - MexE family multidrug efflux RND transporter periplasmic adaptor subunit, at 1,422,012 to 1,423,205 _RS06780 BWI76_RS06785: BWI76_RS06785 - DNA-binding transcriptional repressor AcrR, at 1,423,348 to 1,423,998 _RS06785 BWI76_RS06790: BWI76_RS06790 - mechanosensitive channel MscK, at 1,424,129 to 1,427,470 _RS06790 Position (kb) 1423 1424Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1422.692 kb on - strand, within BWI76_RS06780at 1422.782 kb on - strand, within BWI76_RS06780at 1422.802 kb on + strand, within BWI76_RS06780at 1422.810 kb on - strand, within BWI76_RS06780at 1422.831 kb on - strand, within BWI76_RS06780at 1422.985 kb on + strand, within BWI76_RS06780at 1423.032 kb on + strand, within BWI76_RS06780at 1423.034 kb on - strand, within BWI76_RS06780at 1423.140 kb on - strandat 1423.142 kb on + strandat 1423.161 kb on + strandat 1423.430 kb on + strand, within BWI76_RS06785at 1423.562 kb on - strand, within BWI76_RS06785at 1423.660 kb on + strand, within BWI76_RS06785at 1423.786 kb on - strand, within BWI76_RS06785at 1423.786 kb on - strand, within BWI76_RS06785at 1423.906 kb on - strand, within BWI76_RS06785at 1423.906 kb on - strand, within BWI76_RS06785at 1423.916 kb on - strand, within BWI76_RS06785at 1423.916 kb on - strand, within BWI76_RS06785at 1423.976 kb on + strandat 1424.132 kb on - strandat 1424.132 kb on - strandat 1424.626 kb on + strand, within BWI76_RS06790at 1424.780 kb on - strand, within BWI76_RS06790at 1424.792 kb on - strand, within BWI76_RS06790at 1424.951 kb on + strand, within BWI76_RS06790

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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1,422,692 - BWI76_RS06780 0.57 -2.9
1,422,782 - BWI76_RS06780 0.64 -0.8
1,422,802 + BWI76_RS06780 0.66 -1.7
1,422,810 - BWI76_RS06780 0.67 -3.0
1,422,831 - BWI76_RS06780 0.69 -3.6
1,422,985 + BWI76_RS06780 0.81 -2.3
1,423,032 + BWI76_RS06780 0.85 -3.6
1,423,034 - BWI76_RS06780 0.86 -2.0
1,423,140 - -1.4
1,423,142 + -4.5
1,423,161 + -1.2
1,423,430 + BWI76_RS06785 0.13 +2.2
1,423,562 - BWI76_RS06785 0.33 +1.4
1,423,660 + BWI76_RS06785 0.48 +2.4
1,423,786 - BWI76_RS06785 0.67 +2.3
1,423,786 - BWI76_RS06785 0.67 +2.0
1,423,906 - BWI76_RS06785 0.86 +3.0
1,423,906 - BWI76_RS06785 0.86 +1.7
1,423,916 - BWI76_RS06785 0.87 +0.4
1,423,916 - BWI76_RS06785 0.87 +1.9
1,423,976 + -0.4
1,424,132 - -0.7
1,424,132 - -0.0
1,424,626 + BWI76_RS06790 0.15 -2.2
1,424,780 - BWI76_RS06790 0.19 -0.3
1,424,792 - BWI76_RS06790 0.20 +0.5
1,424,951 + BWI76_RS06790 0.25 +0.2

Or see this region's nucleotide sequence