Experiment: Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01990 and BWI76_RS01995 overlap by 16 nucleotides BWI76_RS01995 and BWI76_RS02000 are separated by 84 nucleotides BWI76_RS02000 and BWI76_RS02005 are separated by 258 nucleotides
BWI76_RS01990: BWI76_RS01990 - cyclic diguanylate phosphodiesterase, at 409,135 to 410,739
_RS01990
BWI76_RS01995: BWI76_RS01995 - AraC family transcriptional regulator, at 410,724 to 411,053
_RS01995
BWI76_RS02000: BWI76_RS02000 - transcriptional regulator, at 411,138 to 411,596
_RS02000
BWI76_RS02005: BWI76_RS02005 - glutathione S-transferase, at 411,855 to 412,523
_RS02005
Position (kb) 410
411
412 Strain fitness (log2 ratio) -2
-1
0
1 at 409.725 kb on - strand, within BWI76_RS01990 at 409.726 kb on + strand, within BWI76_RS01990 at 409.734 kb on - strand, within BWI76_RS01990 at 409.824 kb on - strand, within BWI76_RS01990 at 409.864 kb on + strand, within BWI76_RS01990 at 409.864 kb on + strand, within BWI76_RS01990 at 409.864 kb on + strand, within BWI76_RS01990 at 409.865 kb on + strand, within BWI76_RS01990 at 409.872 kb on - strand, within BWI76_RS01990 at 409.887 kb on + strand, within BWI76_RS01990 at 409.887 kb on + strand, within BWI76_RS01990 at 409.933 kb on + strand, within BWI76_RS01990 at 409.945 kb on + strand, within BWI76_RS01990 at 409.974 kb on - strand, within BWI76_RS01990 at 409.997 kb on + strand, within BWI76_RS01990 at 410.141 kb on - strand, within BWI76_RS01990 at 410.142 kb on - strand, within BWI76_RS01990 at 410.279 kb on - strand, within BWI76_RS01990 at 410.291 kb on + strand, within BWI76_RS01990 at 410.413 kb on + strand, within BWI76_RS01990 at 410.422 kb on + strand, within BWI76_RS01990 at 410.430 kb on - strand, within BWI76_RS01990 at 410.625 kb on - strand at 410.915 kb on - strand, within BWI76_RS01995 at 411.091 kb on - strand at 411.314 kb on + strand, within BWI76_RS02000 at 411.385 kb on + strand, within BWI76_RS02000 at 411.393 kb on - strand, within BWI76_RS02000 at 411.393 kb on - strand, within BWI76_RS02000 at 411.454 kb on + strand, within BWI76_RS02000 at 411.454 kb on + strand, within BWI76_RS02000 at 411.454 kb on + strand, within BWI76_RS02000 at 411.454 kb on + strand, within BWI76_RS02000 at 411.454 kb on + strand, within BWI76_RS02000 at 411.462 kb on - strand, within BWI76_RS02000 at 411.462 kb on - strand, within BWI76_RS02000 at 411.462 kb on - strand, within BWI76_RS02000 at 411.462 kb on - strand, within BWI76_RS02000 at 411.699 kb on + strand at 411.699 kb on + strand at 411.699 kb on + strand at 411.699 kb on + strand at 411.702 kb on - strand at 411.707 kb on - strand at 411.707 kb on - strand at 411.707 kb on - strand at 411.707 kb on - strand at 411.727 kb on + strand at 411.864 kb on - strand at 411.943 kb on - strand, within BWI76_RS02005 at 411.951 kb on - strand, within BWI76_RS02005 at 411.953 kb on + strand, within BWI76_RS02005 at 411.959 kb on + strand, within BWI76_RS02005
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 409,725 - BWI76_RS01990 0.37 +0.3 409,726 + BWI76_RS01990 0.37 +0.5 409,734 - BWI76_RS01990 0.37 +0.2 409,824 - BWI76_RS01990 0.43 +0.7 409,864 + BWI76_RS01990 0.45 +0.8 409,864 + BWI76_RS01990 0.45 -0.2 409,864 + BWI76_RS01990 0.45 -0.5 409,865 + BWI76_RS01990 0.45 +0.7 409,872 - BWI76_RS01990 0.46 -0.1 409,887 + BWI76_RS01990 0.47 +0.3 409,887 + BWI76_RS01990 0.47 -0.3 409,933 + BWI76_RS01990 0.50 -0.2 409,945 + BWI76_RS01990 0.50 +0.8 409,974 - BWI76_RS01990 0.52 +0.1 409,997 + BWI76_RS01990 0.54 +0.3 410,141 - BWI76_RS01990 0.63 -0.2 410,142 - BWI76_RS01990 0.63 +0.8 410,279 - BWI76_RS01990 0.71 -0.7 410,291 + BWI76_RS01990 0.72 -0.7 410,413 + BWI76_RS01990 0.80 -0.5 410,422 + BWI76_RS01990 0.80 -1.3 410,430 - BWI76_RS01990 0.81 -0.4 410,625 - +0.3 410,915 - BWI76_RS01995 0.58 -1.6 411,091 - -0.4 411,314 + BWI76_RS02000 0.38 -1.0 411,385 + BWI76_RS02000 0.54 -0.9 411,393 - BWI76_RS02000 0.56 -1.0 411,393 - BWI76_RS02000 0.56 -1.2 411,454 + BWI76_RS02000 0.69 -2.0 411,454 + BWI76_RS02000 0.69 +0.2 411,454 + BWI76_RS02000 0.69 -0.4 411,454 + BWI76_RS02000 0.69 -1.5 411,454 + BWI76_RS02000 0.69 -0.8 411,462 - BWI76_RS02000 0.71 -1.1 411,462 - BWI76_RS02000 0.71 +0.2 411,462 - BWI76_RS02000 0.71 -0.9 411,462 - BWI76_RS02000 0.71 -1.4 411,699 + -0.1 411,699 + -0.6 411,699 + +0.0 411,699 + +1.1 411,702 - -1.9 411,707 - +0.1 411,707 - +0.3 411,707 - +0.2 411,707 - -1.2 411,727 + -1.1 411,864 - +1.0 411,943 - BWI76_RS02005 0.13 -0.4 411,951 - BWI76_RS02005 0.14 -1.3 411,953 + BWI76_RS02005 0.15 +0.6 411,959 + BWI76_RS02005 0.16 +0.0
Or see this region's nucleotide sequence