Experiment: Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01980 and BWI76_RS01985 are separated by 145 nucleotides BWI76_RS01985 and BWI76_RS01990 are separated by 544 nucleotides BWI76_RS01990 and BWI76_RS01995 overlap by 16 nucleotides BWI76_RS01995 and BWI76_RS02000 are separated by 84 nucleotides
BWI76_RS01980: BWI76_RS01980 - anti-adapter protein IraM, at 407,774 to 408,163
_RS01980
BWI76_RS01985: BWI76_RS01985 - membrane protein, at 408,309 to 408,590
_RS01985
BWI76_RS01990: BWI76_RS01990 - cyclic diguanylate phosphodiesterase, at 409,135 to 410,739
_RS01990
BWI76_RS01995: BWI76_RS01995 - AraC family transcriptional regulator, at 410,724 to 411,053
_RS01995
BWI76_RS02000: BWI76_RS02000 - transcriptional regulator, at 411,138 to 411,596
_RS02000
Position (kb) 409
410
411 Strain fitness (log2 ratio) -2
-1
0
1
2 at 408.166 kb on - strand at 408.200 kb on - strand at 408.208 kb on + strand at 408.208 kb on + strand at 408.247 kb on + strand at 408.255 kb on - strand at 408.255 kb on - strand at 408.265 kb on - strand at 408.283 kb on - strand at 408.394 kb on + strand, within BWI76_RS01985 at 408.449 kb on + strand, within BWI76_RS01985 at 408.449 kb on + strand, within BWI76_RS01985 at 408.457 kb on - strand, within BWI76_RS01985 at 408.457 kb on - strand, within BWI76_RS01985 at 408.470 kb on + strand, within BWI76_RS01985 at 408.498 kb on - strand at 408.528 kb on + strand, within BWI76_RS01985 at 408.528 kb on + strand, within BWI76_RS01985 at 408.528 kb on + strand, within BWI76_RS01985 at 408.541 kb on - strand, within BWI76_RS01985 at 408.546 kb on - strand, within BWI76_RS01985 at 408.553 kb on - strand, within BWI76_RS01985 at 408.563 kb on - strand at 408.592 kb on + strand at 408.654 kb on + strand at 408.772 kb on - strand at 408.880 kb on + strand at 408.939 kb on + strand at 409.009 kb on - strand at 409.030 kb on + strand at 409.035 kb on + strand at 409.038 kb on - strand at 409.043 kb on - strand at 409.049 kb on + strand at 409.049 kb on + strand at 409.062 kb on - strand at 409.062 kb on - strand at 409.088 kb on + strand at 409.088 kb on + strand at 409.088 kb on + strand at 409.088 kb on + strand at 409.096 kb on - strand at 409.102 kb on + strand at 409.102 kb on + strand at 409.102 kb on + strand at 409.102 kb on + strand at 409.110 kb on - strand at 409.110 kb on - strand at 409.110 kb on - strand at 409.110 kb on - strand at 409.110 kb on - strand at 409.137 kb on + strand at 409.180 kb on + strand at 409.180 kb on + strand at 409.184 kb on + strand at 409.194 kb on - strand at 409.204 kb on + strand at 409.217 kb on + strand at 409.222 kb on + strand at 409.235 kb on - strand at 409.329 kb on - strand, within BWI76_RS01990 at 409.374 kb on + strand, within BWI76_RS01990 at 409.381 kb on - strand, within BWI76_RS01990 at 409.404 kb on + strand, within BWI76_RS01990 at 409.412 kb on - strand, within BWI76_RS01990 at 409.412 kb on - strand, within BWI76_RS01990 at 409.417 kb on + strand, within BWI76_RS01990 at 409.571 kb on + strand, within BWI76_RS01990 at 409.571 kb on + strand, within BWI76_RS01990 at 409.579 kb on - strand, within BWI76_RS01990 at 409.579 kb on - strand, within BWI76_RS01990 at 409.579 kb on - strand, within BWI76_RS01990 at 409.579 kb on - strand, within BWI76_RS01990 at 409.579 kb on - strand, within BWI76_RS01990 at 409.612 kb on + strand, within BWI76_RS01990 at 409.614 kb on + strand, within BWI76_RS01990 at 409.616 kb on + strand, within BWI76_RS01990 at 409.620 kb on - strand, within BWI76_RS01990 at 409.622 kb on - strand, within BWI76_RS01990 at 409.717 kb on + strand, within BWI76_RS01990 at 409.720 kb on - strand, within BWI76_RS01990 at 409.725 kb on - strand, within BWI76_RS01990 at 409.726 kb on + strand, within BWI76_RS01990 at 409.734 kb on - strand, within BWI76_RS01990 at 409.824 kb on - strand, within BWI76_RS01990 at 409.864 kb on + strand, within BWI76_RS01990 at 409.864 kb on + strand, within BWI76_RS01990 at 409.864 kb on + strand, within BWI76_RS01990 at 409.865 kb on + strand, within BWI76_RS01990 at 409.872 kb on - strand, within BWI76_RS01990 at 409.887 kb on + strand, within BWI76_RS01990 at 409.887 kb on + strand, within BWI76_RS01990 at 409.933 kb on + strand, within BWI76_RS01990 at 409.945 kb on + strand, within BWI76_RS01990 at 409.974 kb on - strand, within BWI76_RS01990 at 409.997 kb on + strand, within BWI76_RS01990 at 410.141 kb on - strand, within BWI76_RS01990 at 410.142 kb on - strand, within BWI76_RS01990 at 410.279 kb on - strand, within BWI76_RS01990 at 410.291 kb on + strand, within BWI76_RS01990 at 410.413 kb on + strand, within BWI76_RS01990 at 410.422 kb on + strand, within BWI76_RS01990 at 410.430 kb on - strand, within BWI76_RS01990 at 410.625 kb on - strand at 410.915 kb on - strand, within BWI76_RS01995 at 411.091 kb on - strand at 411.314 kb on + strand, within BWI76_RS02000 at 411.385 kb on + strand, within BWI76_RS02000 at 411.393 kb on - strand, within BWI76_RS02000 at 411.393 kb on - strand, within BWI76_RS02000 at 411.454 kb on + strand, within BWI76_RS02000 at 411.454 kb on + strand, within BWI76_RS02000 at 411.454 kb on + strand, within BWI76_RS02000 at 411.454 kb on + strand, within BWI76_RS02000 at 411.454 kb on + strand, within BWI76_RS02000 at 411.462 kb on - strand, within BWI76_RS02000 at 411.462 kb on - strand, within BWI76_RS02000 at 411.462 kb on - strand, within BWI76_RS02000 at 411.462 kb on - strand, within BWI76_RS02000 at 411.699 kb on + strand at 411.699 kb on + strand at 411.699 kb on + strand at 411.699 kb on + strand at 411.702 kb on - strand at 411.707 kb on - strand at 411.707 kb on - strand at 411.707 kb on - strand at 411.707 kb on - strand at 411.727 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 408,166 - -0.2 408,200 - -0.0 408,208 + -1.1 408,208 + +0.3 408,247 + -0.3 408,255 - -0.6 408,255 - +0.3 408,265 - -0.0 408,283 - +0.7 408,394 + BWI76_RS01985 0.30 -0.2 408,449 + BWI76_RS01985 0.50 -0.0 408,449 + BWI76_RS01985 0.50 -0.5 408,457 - BWI76_RS01985 0.52 -0.1 408,457 - BWI76_RS01985 0.52 +0.4 408,470 + BWI76_RS01985 0.57 -0.8 408,498 - +2.6 408,528 + BWI76_RS01985 0.78 -0.1 408,528 + BWI76_RS01985 0.78 +1.0 408,528 + BWI76_RS01985 0.78 +2.1 408,541 - BWI76_RS01985 0.82 +1.3 408,546 - BWI76_RS01985 0.84 +1.1 408,553 - BWI76_RS01985 0.87 +0.1 408,563 - -0.5 408,592 + +0.5 408,654 + -1.0 408,772 - +1.7 408,880 + +2.7 408,939 + -0.6 409,009 - -0.3 409,030 + -0.8 409,035 + -0.5 409,038 - +1.5 409,043 - +0.3 409,049 + +0.3 409,049 + -1.1 409,062 - +0.3 409,062 - -0.6 409,088 + -0.1 409,088 + -0.3 409,088 + -0.3 409,088 + +0.5 409,096 - +2.4 409,102 + -0.2 409,102 + -1.0 409,102 + -0.2 409,102 + -0.4 409,110 - +0.8 409,110 - +2.5 409,110 - -1.4 409,110 - -0.7 409,110 - -1.5 409,137 + +0.2 409,180 + -0.0 409,180 + +1.3 409,184 + -1.8 409,194 - -0.1 409,204 + +1.9 409,217 + -0.5 409,222 + -0.4 409,235 - -0.4 409,329 - BWI76_RS01990 0.12 -0.7 409,374 + BWI76_RS01990 0.15 -0.7 409,381 - BWI76_RS01990 0.15 -2.3 409,404 + BWI76_RS01990 0.17 -0.4 409,412 - BWI76_RS01990 0.17 +1.1 409,412 - BWI76_RS01990 0.17 +0.4 409,417 + BWI76_RS01990 0.18 -1.1 409,571 + BWI76_RS01990 0.27 +0.3 409,571 + BWI76_RS01990 0.27 -0.7 409,579 - BWI76_RS01990 0.28 +0.1 409,579 - BWI76_RS01990 0.28 -2.3 409,579 - BWI76_RS01990 0.28 -0.5 409,579 - BWI76_RS01990 0.28 +1.7 409,579 - BWI76_RS01990 0.28 -0.3 409,612 + BWI76_RS01990 0.30 -0.5 409,614 + BWI76_RS01990 0.30 -0.7 409,616 + BWI76_RS01990 0.30 +0.1 409,620 - BWI76_RS01990 0.30 -0.8 409,622 - BWI76_RS01990 0.30 +0.1 409,717 + BWI76_RS01990 0.36 -0.2 409,720 - BWI76_RS01990 0.36 -0.4 409,725 - BWI76_RS01990 0.37 +0.3 409,726 + BWI76_RS01990 0.37 +0.5 409,734 - BWI76_RS01990 0.37 +0.2 409,824 - BWI76_RS01990 0.43 +0.7 409,864 + BWI76_RS01990 0.45 +0.8 409,864 + BWI76_RS01990 0.45 -0.2 409,864 + BWI76_RS01990 0.45 -0.5 409,865 + BWI76_RS01990 0.45 +0.7 409,872 - BWI76_RS01990 0.46 -0.1 409,887 + BWI76_RS01990 0.47 +0.3 409,887 + BWI76_RS01990 0.47 -0.3 409,933 + BWI76_RS01990 0.50 -0.2 409,945 + BWI76_RS01990 0.50 +0.8 409,974 - BWI76_RS01990 0.52 +0.1 409,997 + BWI76_RS01990 0.54 +0.3 410,141 - BWI76_RS01990 0.63 -0.2 410,142 - BWI76_RS01990 0.63 +0.8 410,279 - BWI76_RS01990 0.71 -0.7 410,291 + BWI76_RS01990 0.72 -0.7 410,413 + BWI76_RS01990 0.80 -0.5 410,422 + BWI76_RS01990 0.80 -1.3 410,430 - BWI76_RS01990 0.81 -0.4 410,625 - +0.3 410,915 - BWI76_RS01995 0.58 -1.6 411,091 - -0.4 411,314 + BWI76_RS02000 0.38 -1.0 411,385 + BWI76_RS02000 0.54 -0.9 411,393 - BWI76_RS02000 0.56 -1.0 411,393 - BWI76_RS02000 0.56 -1.2 411,454 + BWI76_RS02000 0.69 -2.0 411,454 + BWI76_RS02000 0.69 +0.2 411,454 + BWI76_RS02000 0.69 -0.4 411,454 + BWI76_RS02000 0.69 -1.5 411,454 + BWI76_RS02000 0.69 -0.8 411,462 - BWI76_RS02000 0.71 -1.1 411,462 - BWI76_RS02000 0.71 +0.2 411,462 - BWI76_RS02000 0.71 -0.9 411,462 - BWI76_RS02000 0.71 -1.4 411,699 + -0.1 411,699 + -0.6 411,699 + +0.0 411,699 + +1.1 411,702 - -1.9 411,707 - +0.1 411,707 - +0.3 411,707 - +0.2 411,707 - -1.2 411,727 + -1.1
Or see this region's nucleotide sequence