Experiment: MoLS4 minimal media with D,L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3003 and DvMF_3004 are separated by 150 nucleotides DvMF_3004 and DvMF_3005 are separated by 197 nucleotides
DvMF_3003: DvMF_3003 - putative transcriptional regulator, GntR family (RefSeq), at 3,790,053 to 3,791,237
_3003
DvMF_3004: DvMF_3004 - pyridoxamine 5'-phosphate oxidase-related FMN-binding protein (RefSeq), at 3,791,388 to 3,791,849
_3004
DvMF_3005: DvMF_3005 - transcriptional regulator, GntR family with aminotransferase domain (RefSeq), at 3,792,047 to 3,793,507
_3005
Position (kb)
3791
3792 Strain fitness (log2 ratio)
-1
0
1 at 3790.481 kb on - strand, within DvMF_3003 at 3790.503 kb on - strand, within DvMF_3003 at 3790.736 kb on + strand, within DvMF_3003 at 3790.736 kb on + strand, within DvMF_3003 at 3790.851 kb on - strand, within DvMF_3003 at 3790.927 kb on - strand, within DvMF_3003 at 3791.232 kb on + strand at 3791.240 kb on - strand at 3791.375 kb on - strand at 3791.385 kb on + strand at 3791.489 kb on - strand, within DvMF_3004 at 3791.587 kb on + strand, within DvMF_3004 at 3791.595 kb on - strand, within DvMF_3004 at 3791.614 kb on - strand, within DvMF_3004 at 3791.642 kb on + strand, within DvMF_3004 at 3792.050 kb on - strand at 3792.133 kb on + strand at 3792.139 kb on + strand at 3792.490 kb on + strand, within DvMF_3005 at 3792.563 kb on - strand, within DvMF_3005 at 3792.740 kb on + strand, within DvMF_3005 at 3792.748 kb on - strand, within DvMF_3005 at 3792.782 kb on - strand, within DvMF_3005
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 minimal media with D,L-Histidine remove 3,790,481 - DvMF_3003 0.36 -1.4 3,790,503 - DvMF_3003 0.38 -0.6 3,790,736 + DvMF_3003 0.58 -1.5 3,790,736 + DvMF_3003 0.58 -0.4 3,790,851 - DvMF_3003 0.67 -0.4 3,790,927 - DvMF_3003 0.74 -0.4 3,791,232 + -0.8 3,791,240 - -0.7 3,791,375 - -0.4 3,791,385 + -0.2 3,791,489 - DvMF_3004 0.22 -0.1 3,791,587 + DvMF_3004 0.43 +0.4 3,791,595 - DvMF_3004 0.45 +1.1 3,791,614 - DvMF_3004 0.49 -0.1 3,791,642 + DvMF_3004 0.55 +0.0 3,792,050 - -1.3 3,792,133 + +0.6 3,792,139 + +0.1 3,792,490 + DvMF_3005 0.30 +0.5 3,792,563 - DvMF_3005 0.35 -0.2 3,792,740 + DvMF_3005 0.47 -0.0 3,792,748 - DvMF_3005 0.48 +0.2 3,792,782 - DvMF_3005 0.50 -0.2
Or see this region's nucleotide sequence