Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3004

Experiment: MoLS4 minimal media with D,L-Histidine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_3003 and DvMF_3004 are separated by 150 nucleotidesDvMF_3004 and DvMF_3005 are separated by 197 nucleotides DvMF_3003: DvMF_3003 - putative transcriptional regulator, GntR family (RefSeq), at 3,790,053 to 3,791,237 _3003 DvMF_3004: DvMF_3004 - pyridoxamine 5'-phosphate oxidase-related FMN-binding protein (RefSeq), at 3,791,388 to 3,791,849 _3004 DvMF_3005: DvMF_3005 - transcriptional regulator, GntR family with aminotransferase domain (RefSeq), at 3,792,047 to 3,793,507 _3005 Position (kb) 3791 3792Strain fitness (log2 ratio) -1 0 1at 3790.481 kb on - strand, within DvMF_3003at 3790.503 kb on - strand, within DvMF_3003at 3790.736 kb on + strand, within DvMF_3003at 3790.736 kb on + strand, within DvMF_3003at 3790.851 kb on - strand, within DvMF_3003at 3790.927 kb on - strand, within DvMF_3003at 3791.232 kb on + strandat 3791.240 kb on - strandat 3791.375 kb on - strandat 3791.385 kb on + strandat 3791.489 kb on - strand, within DvMF_3004at 3791.587 kb on + strand, within DvMF_3004at 3791.595 kb on - strand, within DvMF_3004at 3791.614 kb on - strand, within DvMF_3004at 3791.642 kb on + strand, within DvMF_3004at 3792.050 kb on - strandat 3792.133 kb on + strandat 3792.139 kb on + strandat 3792.490 kb on + strand, within DvMF_3005at 3792.563 kb on - strand, within DvMF_3005at 3792.740 kb on + strand, within DvMF_3005at 3792.748 kb on - strand, within DvMF_3005at 3792.782 kb on - strand, within DvMF_3005

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with D,L-Histidine
remove
3,790,481 - DvMF_3003 0.36 -1.4
3,790,503 - DvMF_3003 0.38 -0.6
3,790,736 + DvMF_3003 0.58 -1.5
3,790,736 + DvMF_3003 0.58 -0.4
3,790,851 - DvMF_3003 0.67 -0.4
3,790,927 - DvMF_3003 0.74 -0.4
3,791,232 + -0.8
3,791,240 - -0.7
3,791,375 - -0.4
3,791,385 + -0.2
3,791,489 - DvMF_3004 0.22 -0.1
3,791,587 + DvMF_3004 0.43 +0.4
3,791,595 - DvMF_3004 0.45 +1.1
3,791,614 - DvMF_3004 0.49 -0.1
3,791,642 + DvMF_3004 0.55 +0.0
3,792,050 - -1.3
3,792,133 + +0.6
3,792,139 + +0.1
3,792,490 + DvMF_3005 0.30 +0.5
3,792,563 - DvMF_3005 0.35 -0.2
3,792,740 + DvMF_3005 0.47 -0.0
3,792,748 - DvMF_3005 0.48 +0.2
3,792,782 - DvMF_3005 0.50 -0.2

Or see this region's nucleotide sequence