Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2420

Experiment: MoLS4 minimal media with D,L-Histidine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2419 and DvMF_2420 are separated by 561 nucleotidesDvMF_2420 and DvMF_2421 are separated by 182 nucleotidesDvMF_2421 and DvMF_2422 are separated by 97 nucleotides DvMF_2419: DvMF_2419 - type III secretion regulator YopN/LcrE/InvE/MxiC (RefSeq), at 3,056,624 to 3,057,763 _2419 DvMF_2420: DvMF_2420 - hypothetical protein (RefSeq), at 3,058,325 to 3,058,621 _2420 DvMF_2421: DvMF_2421 - hypothetical protein (RefSeq), at 3,058,804 to 3,059,316 _2421 DvMF_2422: DvMF_2422 - type III secretion low calcium response chaperone LcrH/SycD (RefSeq), at 3,059,414 to 3,059,917 _2422 Position (kb) 3058 3059Strain fitness (log2 ratio) -1 0 1at 3057.423 kb on + strand, within DvMF_2419at 3057.604 kb on - strand, within DvMF_2419at 3057.722 kb on + strandat 3057.997 kb on + strandat 3058.508 kb on + strand, within DvMF_2420at 3058.795 kb on - strandat 3059.228 kb on - strand, within DvMF_2421at 3059.228 kb on - strand, within DvMF_2421at 3059.228 kb on - strand, within DvMF_2421at 3059.238 kb on - strand, within DvMF_2421at 3059.480 kb on - strand, within DvMF_2422at 3059.515 kb on + strand, within DvMF_2422

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with D,L-Histidine
remove
3,057,423 + DvMF_2419 0.70 -0.6
3,057,604 - DvMF_2419 0.86 -1.4
3,057,722 + -0.6
3,057,997 + -0.5
3,058,508 + DvMF_2420 0.62 -0.1
3,058,795 - -0.5
3,059,228 - DvMF_2421 0.83 -0.4
3,059,228 - DvMF_2421 0.83 -0.2
3,059,228 - DvMF_2421 0.83 -1.3
3,059,238 - DvMF_2421 0.85 -0.5
3,059,480 - DvMF_2422 0.13 -0.8
3,059,515 + DvMF_2422 0.20 +0.5

Or see this region's nucleotide sequence