Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1363

Experiment: MoLS4 minimal media with D,L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1361 and DvMF_1362 are separated by 182 nucleotidesDvMF_1362 and DvMF_1363 are separated by 59 nucleotidesDvMF_1363 and DvMF_1364 are separated by 320 nucleotides DvMF_1361: DvMF_1361 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 1,665,536 to 1,668,274 _1361 DvMF_1362: DvMF_1362 - hypothetical protein (RefSeq), at 1,668,457 to 1,668,852 _1362 DvMF_1363: DvMF_1363 - hypothetical protein (RefSeq), at 1,668,912 to 1,670,654 _1363 DvMF_1364: DvMF_1364 - ferric uptake regulator, Fur family (RefSeq), at 1,670,975 to 1,671,433 _1364 Position (kb) 1668 1669 1670 1671Strain fitness (log2 ratio) -1 0 1at 1667.993 kb on - strand, within DvMF_1361at 1668.179 kb on - strandat 1668.182 kb on - strandat 1668.184 kb on - strandat 1668.378 kb on - strandat 1668.603 kb on + strand, within DvMF_1362at 1668.671 kb on + strand, within DvMF_1362at 1668.679 kb on - strand, within DvMF_1362at 1668.698 kb on + strand, within DvMF_1362at 1668.732 kb on - strand, within DvMF_1362at 1668.974 kb on - strandat 1668.990 kb on + strandat 1669.150 kb on + strand, within DvMF_1363at 1669.264 kb on + strand, within DvMF_1363at 1669.474 kb on + strand, within DvMF_1363at 1669.475 kb on - strand, within DvMF_1363at 1669.689 kb on - strand, within DvMF_1363at 1670.027 kb on + strand, within DvMF_1363at 1670.074 kb on + strand, within DvMF_1363at 1670.569 kb on + strandat 1670.650 kb on + strandat 1671.476 kb on - strandat 1671.476 kb on - strandat 1671.480 kb on + strandat 1671.581 kb on + strandat 1671.589 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with D,L-Histidine
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1,667,993 - DvMF_1361 0.90 -0.4
1,668,179 - -0.1
1,668,182 - +0.0
1,668,184 - -0.4
1,668,378 - -0.8
1,668,603 + DvMF_1362 0.37 -1.5
1,668,671 + DvMF_1362 0.54 +0.2
1,668,679 - DvMF_1362 0.56 +0.5
1,668,698 + DvMF_1362 0.61 -1.0
1,668,732 - DvMF_1362 0.69 -1.2
1,668,974 - -1.1
1,668,990 + +0.2
1,669,150 + DvMF_1363 0.14 -0.2
1,669,264 + DvMF_1363 0.20 -0.3
1,669,474 + DvMF_1363 0.32 -1.6
1,669,475 - DvMF_1363 0.32 -0.5
1,669,689 - DvMF_1363 0.45 -0.8
1,670,027 + DvMF_1363 0.64 -1.0
1,670,074 + DvMF_1363 0.67 -0.3
1,670,569 + -0.6
1,670,650 + -0.8
1,671,476 - -0.5
1,671,476 - -0.2
1,671,480 + -0.9
1,671,581 + -0.5
1,671,589 - -1.4

Or see this region's nucleotide sequence