Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1080

Experiment: MoLS4 minimal media with D,L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1078 and DvMF_1079 overlap by 4 nucleotidesDvMF_1079 and DvMF_1080 are separated by 143 nucleotidesDvMF_1080 and DvMF_1081 are separated by 497 nucleotidesDvMF_1081 and DvMF_1082 are separated by 142 nucleotides DvMF_1078: DvMF_1078 - hypothetical protein (RefSeq), at 1,318,795 to 1,319,331 _1078 DvMF_1079: DvMF_1079 - hypothetical protein (RefSeq), at 1,319,328 to 1,319,684 _1079 DvMF_1080: DvMF_1080 - hypothetical protein (RefSeq), at 1,319,828 to 1,320,598 _1080 DvMF_1081: DvMF_1081 - hypothetical protein (RefSeq), at 1,321,096 to 1,321,299 _1081 DvMF_1082: DvMF_1082 - hypothetical protein (RefSeq), at 1,321,442 to 1,321,846 _1082 Position (kb) 1319 1320 1321Strain fitness (log2 ratio) -2 -1 0 1at 1318.970 kb on + strand, within DvMF_1078at 1319.042 kb on - strand, within DvMF_1078at 1319.084 kb on + strand, within DvMF_1078at 1319.106 kb on - strand, within DvMF_1078at 1319.108 kb on + strand, within DvMF_1078at 1319.298 kb on - strandat 1319.306 kb on + strandat 1319.478 kb on + strand, within DvMF_1079at 1319.735 kb on + strandat 1319.814 kb on - strandat 1319.908 kb on + strand, within DvMF_1080at 1319.982 kb on - strand, within DvMF_1080at 1320.016 kb on - strand, within DvMF_1080at 1320.065 kb on - strand, within DvMF_1080at 1320.110 kb on + strand, within DvMF_1080at 1320.110 kb on + strand, within DvMF_1080at 1320.146 kb on - strand, within DvMF_1080at 1320.232 kb on - strand, within DvMF_1080at 1320.233 kb on - strand, within DvMF_1080at 1320.638 kb on - strandat 1320.701 kb on - strandat 1320.793 kb on - strandat 1320.929 kb on + strandat 1320.950 kb on - strandat 1321.045 kb on - strandat 1321.145 kb on + strand, within DvMF_1081at 1321.578 kb on - strand, within DvMF_1082

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with D,L-Histidine
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1,318,970 + DvMF_1078 0.33 -0.3
1,319,042 - DvMF_1078 0.46 -0.9
1,319,084 + DvMF_1078 0.54 -0.5
1,319,106 - DvMF_1078 0.58 +0.5
1,319,108 + DvMF_1078 0.58 +0.0
1,319,298 - +0.5
1,319,306 + -0.7
1,319,478 + DvMF_1079 0.42 -0.8
1,319,735 + +0.2
1,319,814 - +0.1
1,319,908 + DvMF_1080 0.10 +0.4
1,319,982 - DvMF_1080 0.20 -0.7
1,320,016 - DvMF_1080 0.24 +0.8
1,320,065 - DvMF_1080 0.31 -0.3
1,320,110 + DvMF_1080 0.37 -0.6
1,320,110 + DvMF_1080 0.37 -0.8
1,320,146 - DvMF_1080 0.41 -0.4
1,320,232 - DvMF_1080 0.52 +0.1
1,320,233 - DvMF_1080 0.53 +1.0
1,320,638 - -0.1
1,320,701 - -0.7
1,320,793 - -0.5
1,320,929 + +0.2
1,320,950 - -0.7
1,321,045 - -1.8
1,321,145 + DvMF_1081 0.24 -0.1
1,321,578 - DvMF_1082 0.34 -0.7

Or see this region's nucleotide sequence