Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0187

Experiment: MoLS4 minimal media with D,L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0185 and DvMF_0186 are separated by 84 nucleotidesDvMF_0186 and DvMF_0187 are separated by 174 nucleotidesDvMF_0187 and glpX are separated by 235 nucleotides DvMF_0185: DvMF_0185 - pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit (RefSeq), at 202,524 to 203,375 _0185 DvMF_0186: DvMF_0186 - hypothetical protein (RefSeq), at 203,460 to 203,807 _0186 DvMF_0187: DvMF_0187 - hypothetical protein (RefSeq), at 203,982 to 204,512 _0187 DvMF_0188: glpX - fructose 1,6-bisphosphatase II (RefSeq), at 204,748 to 205,731 glpX Position (kb) 203 204 205Strain fitness (log2 ratio) -2 -1 0 1at 203.371 kb on - strandat 203.548 kb on + strand, within DvMF_0186at 203.573 kb on + strand, within DvMF_0186at 203.573 kb on - strand, within DvMF_0186at 203.603 kb on + strand, within DvMF_0186at 203.783 kb on + strandat 203.951 kb on - strandat 204.129 kb on - strand, within DvMF_0187at 204.306 kb on - strand, within DvMF_0187at 204.404 kb on - strand, within DvMF_0187at 204.413 kb on + strand, within DvMF_0187at 204.525 kb on + strandat 204.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with D,L-Histidine
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203,371 - +0.2
203,548 + DvMF_0186 0.25 -0.5
203,573 + DvMF_0186 0.32 -0.4
203,573 - DvMF_0186 0.32 -0.2
203,603 + DvMF_0186 0.41 -0.6
203,783 + -0.5
203,951 - -0.1
204,129 - DvMF_0187 0.28 -0.4
204,306 - DvMF_0187 0.61 -0.3
204,404 - DvMF_0187 0.79 -0.3
204,413 + DvMF_0187 0.81 -0.1
204,525 + -0.6
204,626 - -2.2

Or see this region's nucleotide sequence