Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trpC and trpF-1 are separated by 47 nucleotides trpF-1 and trpB-2 overlap by 4 nucleotides trpB-2 and trpA overlap by 4 nucleotides
DVU0468: trpC - indole-3-glycerol phosphate synthase (TIGR), at 536,049 to 536,822
trpC
DVU0469: trpF-1 - N-(5-phosphoribosyl)anthranilate isomerase (TIGR), at 536,870 to 537,724
trpF-1
DVU0470: trpB-2 - tryptophan synthase, beta subunit (TIGR), at 537,721 to 538,908
trpB-2
DVU0471: trpA - tryptophan synthase, alpha subunit (TIGR), at 538,905 to 539,678
trpA
Position (kb) 537
538
539 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 536.750 kb on - strand at 536.757 kb on + strand at 536.757 kb on + strand at 536.765 kb on - strand at 536.799 kb on + strand at 536.807 kb on - strand at 536.860 kb on + strand at 536.979 kb on + strand, within trpF-1 at 537.037 kb on - strand, within trpF-1 at 537.037 kb on - strand, within trpF-1 at 537.044 kb on - strand, within trpF-1 at 537.044 kb on - strand, within trpF-1 at 537.135 kb on + strand, within trpF-1 at 537.206 kb on - strand, within trpF-1 at 537.288 kb on + strand, within trpF-1 at 537.389 kb on - strand, within trpF-1 at 537.476 kb on + strand, within trpF-1 at 537.479 kb on - strand, within trpF-1 at 537.489 kb on - strand, within trpF-1 at 537.574 kb on - strand, within trpF-1 at 537.579 kb on - strand, within trpF-1 at 537.664 kb on - strand at 537.671 kb on - strand at 537.688 kb on - strand at 537.690 kb on + strand at 537.692 kb on + strand at 538.023 kb on - strand, within trpB-2 at 538.233 kb on + strand, within trpB-2 at 538.236 kb on - strand, within trpB-2 at 538.244 kb on - strand, within trpB-2 at 538.254 kb on + strand, within trpB-2 at 538.264 kb on + strand, within trpB-2 at 538.432 kb on + strand, within trpB-2 at 538.527 kb on - strand, within trpB-2 at 538.529 kb on - strand, within trpB-2 at 538.594 kb on - strand, within trpB-2 at 538.814 kb on + strand at 538.825 kb on - strand at 538.855 kb on + strand at 538.863 kb on - strand at 538.863 kb on - strand at 538.873 kb on + strand at 539.142 kb on - strand, within trpA at 539.152 kb on - strand, within trpA at 539.178 kb on + strand, within trpA at 539.194 kb on + strand, within trpA at 539.202 kb on - strand, within trpA at 539.202 kb on - strand, within trpA at 539.202 kb on - strand, within trpA at 539.213 kb on + strand, within trpA at 539.279 kb on - strand, within trpA at 539.366 kb on + strand, within trpA at 539.371 kb on + strand, within trpA at 539.434 kb on - strand, within trpA at 539.450 kb on - strand, within trpA at 539.618 kb on - strand at 539.812 kb on + strand at 539.872 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 536,750 - +0.1 536,757 + -1.5 536,757 + +0.6 536,765 - -2.0 536,799 + -0.6 536,807 - -1.0 536,860 + -1.2 536,979 + trpF-1 DVU0469 0.13 -1.4 537,037 - trpF-1 DVU0469 0.20 -0.9 537,037 - trpF-1 DVU0469 0.20 -1.9 537,044 - trpF-1 DVU0469 0.20 -1.0 537,044 - trpF-1 DVU0469 0.20 -2.2 537,135 + trpF-1 DVU0469 0.31 -1.0 537,206 - trpF-1 DVU0469 0.39 -0.4 537,288 + trpF-1 DVU0469 0.49 -1.7 537,389 - trpF-1 DVU0469 0.61 -1.4 537,476 + trpF-1 DVU0469 0.71 +2.2 537,479 - trpF-1 DVU0469 0.71 -2.8 537,489 - trpF-1 DVU0469 0.72 -0.6 537,574 - trpF-1 DVU0469 0.82 -1.5 537,579 - trpF-1 DVU0469 0.83 -1.2 537,664 - -0.8 537,671 - +0.0 537,688 - -0.7 537,690 + +0.5 537,692 + -0.3 538,023 - trpB-2 DVU0470 0.25 -0.5 538,233 + trpB-2 DVU0470 0.43 -1.1 538,236 - trpB-2 DVU0470 0.43 +0.4 538,244 - trpB-2 DVU0470 0.44 -2.0 538,254 + trpB-2 DVU0470 0.45 -0.9 538,264 + trpB-2 DVU0470 0.46 -2.5 538,432 + trpB-2 DVU0470 0.60 -2.2 538,527 - trpB-2 DVU0470 0.68 -1.9 538,529 - trpB-2 DVU0470 0.68 -1.9 538,594 - trpB-2 DVU0470 0.73 -1.9 538,814 + -2.1 538,825 - -1.6 538,855 + +1.2 538,863 - -1.2 538,863 - -0.1 538,873 + -0.0 539,142 - trpA DVU0471 0.31 -3.2 539,152 - trpA DVU0471 0.32 -1.2 539,178 + trpA DVU0471 0.35 -2.1 539,194 + trpA DVU0471 0.37 -0.4 539,202 - trpA DVU0471 0.38 -1.9 539,202 - trpA DVU0471 0.38 -1.8 539,202 - trpA DVU0471 0.38 -0.5 539,213 + trpA DVU0471 0.40 -1.7 539,279 - trpA DVU0471 0.48 -2.1 539,366 + trpA DVU0471 0.60 -3.1 539,371 + trpA DVU0471 0.60 +1.2 539,434 - trpA DVU0471 0.68 -2.4 539,450 - trpA DVU0471 0.70 -0.6 539,618 - +0.6 539,812 + -0.1 539,872 - -0.0
Or see this region's nucleotide sequence