Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroA and DVU0464 are separated by 5 nucleotides DVU0464 and trpE are separated by 131 nucleotides
DVU0463: aroA - 3-phosphoshikimate 1-carboxyvinyltransferase (TIGR), at 530,629 to 531,948
aroA
DVU0464: DVU0464 - prephenate and/or arogenate dehydrogenase <small>(from data)</small>, at 531,954 to 532,721
DVU0464
DVU0465: trpE - anthranilate synthase, component I (TIGR), at 532,853 to 534,451
trpE
Position (kb) 531
532
533 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 531.925 kb on + strand at 531.986 kb on + strand at 532.039 kb on + strand, within DVU0464 at 532.087 kb on + strand, within DVU0464 at 532.260 kb on - strand, within DVU0464 at 532.347 kb on + strand, within DVU0464 at 532.436 kb on - strand, within DVU0464 at 532.436 kb on - strand, within DVU0464 at 532.552 kb on + strand, within DVU0464 at 532.557 kb on + strand, within DVU0464 at 532.678 kb on + strand at 532.692 kb on + strand at 532.700 kb on - strand at 532.722 kb on - strand at 532.737 kb on + strand at 532.844 kb on + strand at 532.917 kb on - strand at 532.938 kb on + strand at 532.948 kb on + strand at 532.951 kb on - strand at 532.956 kb on - strand at 532.961 kb on - strand at 533.078 kb on - strand, within trpE at 533.129 kb on + strand, within trpE at 533.153 kb on + strand, within trpE at 533.220 kb on + strand, within trpE at 533.286 kb on - strand, within trpE at 533.374 kb on - strand, within trpE at 533.461 kb on + strand, within trpE at 533.466 kb on + strand, within trpE at 533.489 kb on - strand, within trpE at 533.512 kb on + strand, within trpE at 533.547 kb on - strand, within trpE at 533.554 kb on - strand, within trpE at 533.608 kb on - strand, within trpE at 533.613 kb on - strand, within trpE at 533.615 kb on + strand, within trpE at 533.615 kb on + strand, within trpE at 533.623 kb on - strand, within trpE at 533.651 kb on - strand, within trpE at 533.687 kb on - strand, within trpE at 533.715 kb on - strand, within trpE at 533.719 kb on + strand, within trpE
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 531,925 + -2.1 531,986 + -1.4 532,039 + DVU0464 0.11 -2.7 532,087 + DVU0464 0.17 -2.8 532,260 - DVU0464 0.40 -2.9 532,347 + DVU0464 0.51 -2.4 532,436 - DVU0464 0.63 +0.7 532,436 - DVU0464 0.63 -2.7 532,552 + DVU0464 0.78 -2.3 532,557 + DVU0464 0.79 +0.5 532,678 + +1.2 532,692 + -1.3 532,700 - -1.3 532,722 - -1.4 532,737 + -1.4 532,844 + +0.5 532,917 - -1.9 532,938 + -1.5 532,948 + -0.0 532,951 - -1.2 532,956 - -1.3 532,961 - -1.3 533,078 - trpE DVU0465 0.14 -0.8 533,129 + trpE DVU0465 0.17 +0.0 533,153 + trpE DVU0465 0.19 -0.9 533,220 + trpE DVU0465 0.23 -2.6 533,286 - trpE DVU0465 0.27 -1.7 533,374 - trpE DVU0465 0.33 -2.4 533,461 + trpE DVU0465 0.38 -1.2 533,466 + trpE DVU0465 0.38 -0.7 533,489 - trpE DVU0465 0.40 -0.7 533,512 + trpE DVU0465 0.41 -1.4 533,547 - trpE DVU0465 0.43 -1.9 533,554 - trpE DVU0465 0.44 -1.1 533,608 - trpE DVU0465 0.47 -0.9 533,613 - trpE DVU0465 0.48 -1.2 533,615 + trpE DVU0465 0.48 -1.3 533,615 + trpE DVU0465 0.48 -1.6 533,623 - trpE DVU0465 0.48 -1.8 533,651 - trpE DVU0465 0.50 -0.1 533,687 - trpE DVU0465 0.52 -1.3 533,715 - trpE DVU0465 0.54 -1.3 533,719 + trpE DVU0465 0.54 -1.3
Or see this region's nucleotide sequence