Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0357 and tRNA-Thr are separated by 75 nucleotides tRNA-Thr and DVU0358 are separated by 214 nucleotides DVU0358 and DVU0359 are separated by 282 nucleotides
DVU0357: DVU0357 - conserved hypothetical protein (TIGR), at 406,059 to 406,976
DVU0357
DVU_tRNA-Thr-1: tRNA-Thr - tRNA with anticodon GGT for Thr (VIMSS-AUTO), at 407,052 to 407,127
tRNA-Thr
DVU0358: DVU0358 - hypothetical protein (TIGR), at 407,342 to 408,085
DVU0358
DVU0359: DVU0359 - HesB-like domain (TIGR), at 408,368 to 408,694
DVU0359
Position (kb) 407
408
409 Strain fitness (log2 ratio) -1
0
1
2 at 406.350 kb on - strand, within DVU0357 at 406.367 kb on + strand, within DVU0357 at 406.431 kb on + strand, within DVU0357 at 406.432 kb on - strand, within DVU0357 at 406.441 kb on + strand, within DVU0357 at 406.561 kb on + strand, within DVU0357 at 406.561 kb on + strand, within DVU0357 at 406.562 kb on + strand, within DVU0357 at 406.569 kb on - strand, within DVU0357 at 406.577 kb on - strand, within DVU0357 at 406.691 kb on - strand, within DVU0357 at 406.742 kb on + strand, within DVU0357 at 406.794 kb on + strand, within DVU0357 at 406.799 kb on + strand, within DVU0357 at 406.799 kb on + strand, within DVU0357 at 406.805 kb on - strand, within DVU0357 at 406.823 kb on + strand, within DVU0357 at 406.876 kb on + strand, within DVU0357 at 406.973 kb on + strand at 407.088 kb on - strand, within tRNA-Thr at 407.101 kb on + strand, within tRNA-Thr at 407.124 kb on - strand at 407.221 kb on + strand at 407.319 kb on + strand at 407.502 kb on - strand, within DVU0358 at 407.595 kb on - strand, within DVU0358 at 407.595 kb on - strand, within DVU0358 at 407.711 kb on - strand, within DVU0358 at 407.758 kb on - strand, within DVU0358 at 407.881 kb on + strand, within DVU0358 at 407.889 kb on - strand, within DVU0358 at 407.923 kb on - strand, within DVU0358 at 407.928 kb on - strand, within DVU0358 at 407.933 kb on - strand, within DVU0358 at 407.985 kb on + strand, within DVU0358 at 407.998 kb on - strand, within DVU0358 at 408.109 kb on + strand at 408.116 kb on + strand at 408.124 kb on - strand at 408.142 kb on - strand at 408.165 kb on - strand at 408.313 kb on + strand at 408.379 kb on - strand at 408.482 kb on + strand, within DVU0359 at 408.514 kb on + strand, within DVU0359 at 408.551 kb on + strand, within DVU0359 at 408.628 kb on - strand, within DVU0359 at 408.846 kb on - strand at 408.934 kb on + strand at 408.942 kb on - strand at 408.975 kb on + strand at 409.019 kb on - strand at 409.021 kb on + strand at 409.022 kb on + strand at 409.071 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 406,350 - DVU0357 0.32 -0.6 406,367 + DVU0357 0.34 +0.2 406,431 + DVU0357 0.41 +0.1 406,432 - DVU0357 0.41 -0.0 406,441 + DVU0357 0.42 -0.7 406,561 + DVU0357 0.55 -0.7 406,561 + DVU0357 0.55 +0.1 406,562 + DVU0357 0.55 -0.0 406,569 - DVU0357 0.56 +0.2 406,577 - DVU0357 0.56 -0.0 406,691 - DVU0357 0.69 +0.0 406,742 + DVU0357 0.74 -0.7 406,794 + DVU0357 0.80 -0.3 406,799 + DVU0357 0.81 -0.1 406,799 + DVU0357 0.81 +0.2 406,805 - DVU0357 0.81 +0.2 406,823 + DVU0357 0.83 -0.0 406,876 + DVU0357 0.89 +0.4 406,973 + -1.7 407,088 - tRNA-Thr DVU_tRNA-Thr-1 0.47 +0.4 407,101 + tRNA-Thr DVU_tRNA-Thr-1 0.64 +2.3 407,124 - -0.4 407,221 + +0.3 407,319 + -0.3 407,502 - DVU0358 0.22 -0.3 407,595 - DVU0358 0.34 +0.6 407,595 - DVU0358 0.34 -0.3 407,711 - DVU0358 0.50 +0.4 407,758 - DVU0358 0.56 -0.7 407,881 + DVU0358 0.72 -0.5 407,889 - DVU0358 0.74 -1.6 407,923 - DVU0358 0.78 -1.5 407,928 - DVU0358 0.79 -0.0 407,933 - DVU0358 0.79 -0.9 407,985 + DVU0358 0.86 +1.0 407,998 - DVU0358 0.88 -0.3 408,109 + -0.1 408,116 + -0.6 408,124 - +0.6 408,142 - -1.0 408,165 - -0.2 408,313 + +0.1 408,379 - +0.4 408,482 + DVU0359 0.35 +0.7 408,514 + DVU0359 0.45 -0.4 408,551 + DVU0359 0.56 -0.2 408,628 - DVU0359 0.80 -0.4 408,846 - -0.6 408,934 + +1.2 408,942 - -0.5 408,975 + -0.8 409,019 - +0.1 409,021 + -1.5 409,022 + -0.1 409,071 + +0.9
Or see this region's nucleotide sequence