Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1585 and ccmG are separated by 26 nucleotides ccmG and DVU1587 overlap by 1 nucleotides DVU1587 and hpt are separated by 80 nucleotides
DVU1585: DVU1585 - Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) (from data) , at 1,667,483 to 1,669,897
DVU1585
DVU1586: ccmG - thioredoxin family protein (TIGR), at 1,669,924 to 1,670,391
ccmG
DVU1587: DVU1587 - N-acetylglutamate synthase (EC 2.3.1.1) (from data) , at 1,670,391 to 1,670,855
DVU1587
DVU1588: hpt - hypoxanthine phosphoribosyltransferase (TIGR), at 1,670,936 to 1,671,466
hpt
Position (kb)
1669
1670
1671 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1668.951 kb on - strand, within DVU1585 at 1668.951 kb on - strand, within DVU1585 at 1669.016 kb on + strand, within DVU1585 at 1669.024 kb on - strand, within DVU1585 at 1669.044 kb on + strand, within DVU1585 at 1669.099 kb on - strand, within DVU1585 at 1669.099 kb on - strand, within DVU1585 at 1669.114 kb on + strand, within DVU1585 at 1669.235 kb on + strand, within DVU1585 at 1669.248 kb on + strand, within DVU1585 at 1669.295 kb on + strand, within DVU1585 at 1669.319 kb on - strand, within DVU1585 at 1669.353 kb on + strand, within DVU1585 at 1669.363 kb on + strand, within DVU1585 at 1669.376 kb on - strand, within DVU1585 at 1669.378 kb on + strand, within DVU1585 at 1669.410 kb on + strand, within DVU1585 at 1669.918 kb on + strand at 1669.974 kb on - strand, within ccmG at 1669.974 kb on - strand, within ccmG at 1670.079 kb on - strand, within ccmG at 1670.098 kb on - strand, within ccmG at 1670.130 kb on + strand, within ccmG at 1670.212 kb on + strand, within ccmG at 1670.443 kb on - strand, within DVU1587 at 1670.456 kb on - strand, within DVU1587 at 1670.480 kb on + strand, within DVU1587 at 1670.563 kb on + strand, within DVU1587 at 1670.571 kb on - strand, within DVU1587 at 1670.634 kb on + strand, within DVU1587 at 1670.653 kb on + strand, within DVU1587 at 1670.783 kb on + strand, within DVU1587 at 1670.783 kb on + strand, within DVU1587 at 1670.784 kb on - strand, within DVU1587 at 1670.852 kb on + strand at 1670.917 kb on + strand at 1670.950 kb on + strand at 1670.950 kb on + strand at 1670.958 kb on - strand at 1670.958 kb on - strand at 1670.975 kb on - strand at 1671.037 kb on - strand, within hpt at 1671.259 kb on - strand, within hpt
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 1,668,951 - DVU1585 0.61 -2.4 1,668,951 - DVU1585 0.61 -0.3 1,669,016 + DVU1585 0.63 -1.2 1,669,024 - DVU1585 0.64 -3.0 1,669,044 + DVU1585 0.65 -1.8 1,669,099 - DVU1585 0.67 -1.7 1,669,099 - DVU1585 0.67 -0.5 1,669,114 + DVU1585 0.68 -2.9 1,669,235 + DVU1585 0.73 -1.5 1,669,248 + DVU1585 0.73 -0.7 1,669,295 + DVU1585 0.75 -1.0 1,669,319 - DVU1585 0.76 -1.0 1,669,353 + DVU1585 0.77 -0.6 1,669,363 + DVU1585 0.78 -0.5 1,669,376 - DVU1585 0.78 -0.1 1,669,378 + DVU1585 0.78 -3.7 1,669,410 + DVU1585 0.80 +0.0 1,669,918 + -0.0 1,669,974 - ccmG DVU1586 0.11 -1.2 1,669,974 - ccmG DVU1586 0.11 -1.3 1,670,079 - ccmG DVU1586 0.33 -1.2 1,670,098 - ccmG DVU1586 0.37 -0.4 1,670,130 + ccmG DVU1586 0.44 -0.2 1,670,212 + ccmG DVU1586 0.62 -0.4 1,670,443 - DVU1587 0.11 -1.3 1,670,456 - DVU1587 0.14 -2.9 1,670,480 + DVU1587 0.19 -0.8 1,670,563 + DVU1587 0.37 -1.6 1,670,571 - DVU1587 0.39 -1.5 1,670,634 + DVU1587 0.52 +0.2 1,670,653 + DVU1587 0.56 -1.9 1,670,783 + DVU1587 0.84 -2.3 1,670,783 + DVU1587 0.84 -2.0 1,670,784 - DVU1587 0.85 -1.2 1,670,852 + -0.0 1,670,917 + -0.1 1,670,950 + +0.1 1,670,950 + -0.2 1,670,958 - +0.1 1,670,958 - -0.3 1,670,975 - -0.1 1,671,037 - hpt DVU1588 0.19 -0.1 1,671,259 - hpt DVU1588 0.61 -0.1
Or see this region's nucleotide sequence