Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.993.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.992.1 and Xcc-8004.993.1 are separated by 285 nucleotidesXcc-8004.993.1 and Xcc-8004.994.1 are separated by 62 nucleotidesXcc-8004.994.1 and Xcc-8004.995.1 are separated by 78 nucleotidesXcc-8004.995.1 and Xcc-8004.996.1 are separated by 0 nucleotides Xcc-8004.992.1: Xcc-8004.992.1 - Cellulase S, at 940,527 to 941,342 Xcc-8004.992.1 Xcc-8004.993.1: Xcc-8004.993.1 - cellulase S, at 941,628 to 942,416 Xcc-8004.993.1 Xcc-8004.994.1: Xcc-8004.994.1 - Rhamnogalacturonate lyase precursor (EC 4.2.2.-), at 942,479 to 942,898 Xcc-8004.994.1 Xcc-8004.995.1: Xcc-8004.995.1 - rhamnogalacturonase B, at 942,977 to 943,399 Xcc-8004.995.1 Xcc-8004.996.1: Xcc-8004.996.1 - Rhamnogalacturonate lyase precursor (EC 4.2.2.-), at 943,400 to 944,101 Xcc-8004.996.1 Position (kb) 941 942 943Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 940.666 kb on - strand, within Xcc-8004.992.1at 940.666 kb on - strand, within Xcc-8004.992.1at 940.788 kb on + strand, within Xcc-8004.992.1at 940.831 kb on - strand, within Xcc-8004.992.1at 940.909 kb on - strand, within Xcc-8004.992.1at 940.909 kb on - strand, within Xcc-8004.992.1at 941.115 kb on + strand, within Xcc-8004.992.1at 941.118 kb on + strand, within Xcc-8004.992.1at 941.118 kb on + strand, within Xcc-8004.992.1at 941.118 kb on + strand, within Xcc-8004.992.1at 941.118 kb on + strand, within Xcc-8004.992.1at 941.119 kb on - strand, within Xcc-8004.992.1at 941.119 kb on - strand, within Xcc-8004.992.1at 941.119 kb on - strand, within Xcc-8004.992.1at 941.259 kb on + strand, within Xcc-8004.992.1at 941.259 kb on + strand, within Xcc-8004.992.1at 941.259 kb on + strand, within Xcc-8004.992.1at 941.260 kb on - strand, within Xcc-8004.992.1at 941.260 kb on - strand, within Xcc-8004.992.1at 941.437 kb on + strandat 941.438 kb on - strandat 941.596 kb on - strandat 941.596 kb on - strandat 941.725 kb on - strand, within Xcc-8004.993.1at 941.743 kb on + strand, within Xcc-8004.993.1at 941.743 kb on + strand, within Xcc-8004.993.1at 941.743 kb on + strand, within Xcc-8004.993.1at 941.744 kb on - strand, within Xcc-8004.993.1at 941.758 kb on - strand, within Xcc-8004.993.1at 941.758 kb on - strand, within Xcc-8004.993.1at 941.763 kb on + strand, within Xcc-8004.993.1at 941.790 kb on - strand, within Xcc-8004.993.1at 941.844 kb on + strand, within Xcc-8004.993.1at 941.844 kb on + strand, within Xcc-8004.993.1at 941.845 kb on - strand, within Xcc-8004.993.1at 941.845 kb on - strand, within Xcc-8004.993.1at 941.901 kb on + strand, within Xcc-8004.993.1at 942.108 kb on - strand, within Xcc-8004.993.1at 942.108 kb on - strand, within Xcc-8004.993.1at 942.150 kb on + strand, within Xcc-8004.993.1at 942.150 kb on + strand, within Xcc-8004.993.1at 942.189 kb on + strand, within Xcc-8004.993.1at 942.190 kb on - strand, within Xcc-8004.993.1at 942.230 kb on + strand, within Xcc-8004.993.1at 942.333 kb on + strand, within Xcc-8004.993.1at 942.333 kb on + strand, within Xcc-8004.993.1at 942.334 kb on - strand, within Xcc-8004.993.1at 942.334 kb on - strand, within Xcc-8004.993.1at 942.420 kb on + strandat 942.420 kb on + strandat 942.421 kb on - strandat 942.507 kb on + strandat 942.797 kb on - strand, within Xcc-8004.994.1at 942.876 kb on + strandat 942.877 kb on - strandat 942.877 kb on - strandat 942.877 kb on - strandat 942.939 kb on + strandat 943.083 kb on + strand, within Xcc-8004.995.1at 943.083 kb on + strand, within Xcc-8004.995.1at 943.084 kb on - strand, within Xcc-8004.995.1at 943.129 kb on - strand, within Xcc-8004.995.1at 943.158 kb on + strand, within Xcc-8004.995.1at 943.401 kb on + strandat 943.401 kb on + strandat 943.401 kb on + strandat 943.401 kb on + strandat 943.401 kb on + strandat 943.401 kb on + strandat 943.402 kb on - strandat 943.402 kb on - strandat 943.408 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
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940,666 - Xcc-8004.992.1 0.17 +1.5
940,666 - Xcc-8004.992.1 0.17 -2.2
940,788 + Xcc-8004.992.1 0.32 +1.0
940,831 - Xcc-8004.992.1 0.37 -3.0
940,909 - Xcc-8004.992.1 0.47 +1.7
940,909 - Xcc-8004.992.1 0.47 -2.5
941,115 + Xcc-8004.992.1 0.72 +0.7
941,118 + Xcc-8004.992.1 0.72 +0.7
941,118 + Xcc-8004.992.1 0.72 -0.2
941,118 + Xcc-8004.992.1 0.72 -0.0
941,118 + Xcc-8004.992.1 0.72 +0.4
941,119 - Xcc-8004.992.1 0.73 -0.1
941,119 - Xcc-8004.992.1 0.73 +1.1
941,119 - Xcc-8004.992.1 0.73 +0.7
941,259 + Xcc-8004.992.1 0.90 +2.1
941,259 + Xcc-8004.992.1 0.90 -2.8
941,259 + Xcc-8004.992.1 0.90 +3.2
941,260 - Xcc-8004.992.1 0.90 -1.1
941,260 - Xcc-8004.992.1 0.90 -1.2
941,437 + +0.9
941,438 - +1.4
941,596 - -1.1
941,596 - -2.2
941,725 - Xcc-8004.993.1 0.12 +0.9
941,743 + Xcc-8004.993.1 0.15 -2.7
941,743 + Xcc-8004.993.1 0.15 +0.2
941,743 + Xcc-8004.993.1 0.15 +1.2
941,744 - Xcc-8004.993.1 0.15 +1.6
941,758 - Xcc-8004.993.1 0.16 -0.8
941,758 - Xcc-8004.993.1 0.16 -0.2
941,763 + Xcc-8004.993.1 0.17 +0.3
941,790 - Xcc-8004.993.1 0.21 -1.3
941,844 + Xcc-8004.993.1 0.27 +0.8
941,844 + Xcc-8004.993.1 0.27 -0.7
941,845 - Xcc-8004.993.1 0.28 +0.5
941,845 - Xcc-8004.993.1 0.28 -0.6
941,901 + Xcc-8004.993.1 0.35 +0.9
942,108 - Xcc-8004.993.1 0.61 -1.2
942,108 - Xcc-8004.993.1 0.61 -2.1
942,150 + Xcc-8004.993.1 0.66 +1.3
942,150 + Xcc-8004.993.1 0.66 -1.5
942,189 + Xcc-8004.993.1 0.71 +1.4
942,190 - Xcc-8004.993.1 0.71 -0.1
942,230 + Xcc-8004.993.1 0.76 -1.2
942,333 + Xcc-8004.993.1 0.89 -0.7
942,333 + Xcc-8004.993.1 0.89 -0.6
942,334 - Xcc-8004.993.1 0.89 +1.6
942,334 - Xcc-8004.993.1 0.89 +0.9
942,420 + +0.2
942,420 + +0.4
942,421 - -0.4
942,507 + +0.4
942,797 - Xcc-8004.994.1 0.76 +0.1
942,876 + -0.2
942,877 - +0.8
942,877 - -2.4
942,877 - +1.3
942,939 + -2.3
943,083 + Xcc-8004.995.1 0.25 +0.3
943,083 + Xcc-8004.995.1 0.25 +0.4
943,084 - Xcc-8004.995.1 0.25 -0.4
943,129 - Xcc-8004.995.1 0.36 +2.0
943,158 + Xcc-8004.995.1 0.43 -1.1
943,401 + +1.4
943,401 + +1.4
943,401 + -2.3
943,401 + -1.2
943,401 + -2.1
943,401 + +1.1
943,402 - -1.6
943,402 - +1.7
943,408 - +2.7

Or see this region's nucleotide sequence