Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.926.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.925.1 and Xcc-8004.926.1 are separated by 22 nucleotidesXcc-8004.926.1 and Xcc-8004.927.1 are separated by 122 nucleotides Xcc-8004.925.1: Xcc-8004.925.1 - FIG01210026: hypothetical protein, at 868,423 to 869,817 Xcc-8004.925.1 Xcc-8004.926.1: Xcc-8004.926.1 - 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44), at 869,840 to 870,781 Xcc-8004.926.1 Xcc-8004.927.1: Xcc-8004.927.1 - Nucleoside-diphosphate-sugar epimerases, at 870,904 to 871,962 Xcc-8004.927.1 Position (kb) 869 870 871Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 868.978 kb on + strand, within Xcc-8004.925.1at 868.979 kb on - strand, within Xcc-8004.925.1at 869.020 kb on + strand, within Xcc-8004.925.1at 869.021 kb on - strand, within Xcc-8004.925.1at 869.021 kb on - strand, within Xcc-8004.925.1at 869.093 kb on - strand, within Xcc-8004.925.1at 869.093 kb on - strand, within Xcc-8004.925.1at 869.112 kb on + strand, within Xcc-8004.925.1at 869.299 kb on + strand, within Xcc-8004.925.1at 869.299 kb on + strand, within Xcc-8004.925.1at 869.300 kb on - strand, within Xcc-8004.925.1at 869.395 kb on + strand, within Xcc-8004.925.1at 869.395 kb on + strand, within Xcc-8004.925.1at 869.398 kb on + strand, within Xcc-8004.925.1at 869.398 kb on + strand, within Xcc-8004.925.1at 869.398 kb on + strand, within Xcc-8004.925.1at 869.399 kb on - strand, within Xcc-8004.925.1at 869.399 kb on - strand, within Xcc-8004.925.1at 869.479 kb on + strand, within Xcc-8004.925.1at 869.480 kb on - strand, within Xcc-8004.925.1at 869.480 kb on - strand, within Xcc-8004.925.1at 869.569 kb on + strand, within Xcc-8004.925.1at 869.569 kb on + strand, within Xcc-8004.925.1at 869.587 kb on + strand, within Xcc-8004.925.1at 869.587 kb on + strand, within Xcc-8004.925.1at 869.587 kb on + strand, within Xcc-8004.925.1at 869.587 kb on + strand, within Xcc-8004.925.1at 869.587 kb on + strand, within Xcc-8004.925.1at 869.587 kb on + strand, within Xcc-8004.925.1at 869.587 kb on + strand, within Xcc-8004.925.1at 869.588 kb on - strand, within Xcc-8004.925.1at 869.588 kb on - strand, within Xcc-8004.925.1at 869.588 kb on - strand, within Xcc-8004.925.1at 869.588 kb on - strand, within Xcc-8004.925.1at 869.662 kb on + strand, within Xcc-8004.925.1at 869.705 kb on - strandat 869.705 kb on - strandat 869.705 kb on - strandat 869.792 kb on - strandat 869.839 kb on + strandat 869.839 kb on + strandat 869.839 kb on + strandat 869.840 kb on - strandat 869.840 kb on - strandat 869.852 kb on - strandat 869.852 kb on - strandat 870.128 kb on + strand, within Xcc-8004.926.1at 870.129 kb on - strand, within Xcc-8004.926.1at 870.129 kb on - strand, within Xcc-8004.926.1at 870.129 kb on - strand, within Xcc-8004.926.1at 870.131 kb on + strand, within Xcc-8004.926.1at 870.132 kb on - strand, within Xcc-8004.926.1at 870.231 kb on - strand, within Xcc-8004.926.1at 870.231 kb on - strand, within Xcc-8004.926.1at 870.231 kb on - strand, within Xcc-8004.926.1at 870.398 kb on + strand, within Xcc-8004.926.1at 870.398 kb on + strand, within Xcc-8004.926.1at 870.399 kb on - strand, within Xcc-8004.926.1at 870.560 kb on + strand, within Xcc-8004.926.1at 870.560 kb on + strand, within Xcc-8004.926.1at 870.561 kb on - strand, within Xcc-8004.926.1at 870.561 kb on - strand, within Xcc-8004.926.1at 870.689 kb on - strandat 871.052 kb on + strand, within Xcc-8004.927.1at 871.052 kb on + strand, within Xcc-8004.927.1at 871.052 kb on + strand, within Xcc-8004.927.1at 871.053 kb on - strand, within Xcc-8004.927.1at 871.053 kb on - strand, within Xcc-8004.927.1at 871.053 kb on - strand, within Xcc-8004.927.1at 871.076 kb on - strand, within Xcc-8004.927.1at 871.223 kb on + strand, within Xcc-8004.927.1at 871.223 kb on + strand, within Xcc-8004.927.1at 871.223 kb on + strand, within Xcc-8004.927.1at 871.223 kb on + strand, within Xcc-8004.927.1at 871.224 kb on - strand, within Xcc-8004.927.1at 871.224 kb on - strand, within Xcc-8004.927.1at 871.224 kb on - strand, within Xcc-8004.927.1at 871.331 kb on + strand, within Xcc-8004.927.1at 871.331 kb on + strand, within Xcc-8004.927.1at 871.332 kb on - strand, within Xcc-8004.927.1at 871.332 kb on - strand, within Xcc-8004.927.1at 871.332 kb on - strand, within Xcc-8004.927.1at 871.332 kb on - strand, within Xcc-8004.927.1at 871.439 kb on + strand, within Xcc-8004.927.1at 871.439 kb on + strand, within Xcc-8004.927.1at 871.439 kb on + strand, within Xcc-8004.927.1at 871.440 kb on - strand, within Xcc-8004.927.1at 871.440 kb on - strand, within Xcc-8004.927.1at 871.681 kb on - strand, within Xcc-8004.927.1at 871.681 kb on - strand, within Xcc-8004.927.1at 871.681 kb on - strand, within Xcc-8004.927.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
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868,978 + Xcc-8004.925.1 0.40 +1.9
868,979 - Xcc-8004.925.1 0.40 +1.5
869,020 + Xcc-8004.925.1 0.43 -3.0
869,021 - Xcc-8004.925.1 0.43 +0.5
869,021 - Xcc-8004.925.1 0.43 +1.4
869,093 - Xcc-8004.925.1 0.48 -0.9
869,093 - Xcc-8004.925.1 0.48 +0.8
869,112 + Xcc-8004.925.1 0.49 +1.7
869,299 + Xcc-8004.925.1 0.63 +3.4
869,299 + Xcc-8004.925.1 0.63 -0.6
869,300 - Xcc-8004.925.1 0.63 -1.8
869,395 + Xcc-8004.925.1 0.70 -1.9
869,395 + Xcc-8004.925.1 0.70 -2.7
869,398 + Xcc-8004.925.1 0.70 +0.0
869,398 + Xcc-8004.925.1 0.70 -1.1
869,398 + Xcc-8004.925.1 0.70 -1.4
869,399 - Xcc-8004.925.1 0.70 -1.9
869,399 - Xcc-8004.925.1 0.70 -0.8
869,479 + Xcc-8004.925.1 0.76 -1.5
869,480 - Xcc-8004.925.1 0.76 +0.5
869,480 - Xcc-8004.925.1 0.76 +0.0
869,569 + Xcc-8004.925.1 0.82 -0.1
869,569 + Xcc-8004.925.1 0.82 -0.6
869,587 + Xcc-8004.925.1 0.83 -2.5
869,587 + Xcc-8004.925.1 0.83 -2.3
869,587 + Xcc-8004.925.1 0.83 -0.4
869,587 + Xcc-8004.925.1 0.83 +1.9
869,587 + Xcc-8004.925.1 0.83 +0.7
869,587 + Xcc-8004.925.1 0.83 +2.9
869,587 + Xcc-8004.925.1 0.83 +0.0
869,588 - Xcc-8004.925.1 0.84 +2.1
869,588 - Xcc-8004.925.1 0.84 +0.6
869,588 - Xcc-8004.925.1 0.84 -3.1
869,588 - Xcc-8004.925.1 0.84 +0.4
869,662 + Xcc-8004.925.1 0.89 -1.1
869,705 - -0.7
869,705 - -3.0
869,705 - -1.1
869,792 - +0.6
869,839 + -2.6
869,839 + -0.8
869,839 + +0.4
869,840 - +1.5
869,840 - +1.1
869,852 - +0.4
869,852 - -0.8
870,128 + Xcc-8004.926.1 0.31 -0.8
870,129 - Xcc-8004.926.1 0.31 +0.1
870,129 - Xcc-8004.926.1 0.31 -0.9
870,129 - Xcc-8004.926.1 0.31 +1.0
870,131 + Xcc-8004.926.1 0.31 +2.4
870,132 - Xcc-8004.926.1 0.31 +2.7
870,231 - Xcc-8004.926.1 0.42 +0.9
870,231 - Xcc-8004.926.1 0.42 -0.9
870,231 - Xcc-8004.926.1 0.42 -2.1
870,398 + Xcc-8004.926.1 0.59 -0.2
870,398 + Xcc-8004.926.1 0.59 -1.9
870,399 - Xcc-8004.926.1 0.59 -2.3
870,560 + Xcc-8004.926.1 0.76 -2.3
870,560 + Xcc-8004.926.1 0.76 -1.6
870,561 - Xcc-8004.926.1 0.77 +1.4
870,561 - Xcc-8004.926.1 0.77 +1.0
870,689 - +2.7
871,052 + Xcc-8004.927.1 0.14 -1.5
871,052 + Xcc-8004.927.1 0.14 +0.6
871,052 + Xcc-8004.927.1 0.14 +0.6
871,053 - Xcc-8004.927.1 0.14 +1.2
871,053 - Xcc-8004.927.1 0.14 -1.7
871,053 - Xcc-8004.927.1 0.14 +0.2
871,076 - Xcc-8004.927.1 0.16 +1.2
871,223 + Xcc-8004.927.1 0.30 +0.3
871,223 + Xcc-8004.927.1 0.30 +1.1
871,223 + Xcc-8004.927.1 0.30 -1.7
871,223 + Xcc-8004.927.1 0.30 -0.6
871,224 - Xcc-8004.927.1 0.30 +1.4
871,224 - Xcc-8004.927.1 0.30 -0.9
871,224 - Xcc-8004.927.1 0.30 +1.3
871,331 + Xcc-8004.927.1 0.40 +0.2
871,331 + Xcc-8004.927.1 0.40 +1.4
871,332 - Xcc-8004.927.1 0.40 +0.7
871,332 - Xcc-8004.927.1 0.40 +1.4
871,332 - Xcc-8004.927.1 0.40 +1.7
871,332 - Xcc-8004.927.1 0.40 +0.8
871,439 + Xcc-8004.927.1 0.51 -0.0
871,439 + Xcc-8004.927.1 0.51 +0.7
871,439 + Xcc-8004.927.1 0.51 +0.7
871,440 - Xcc-8004.927.1 0.51 +0.9
871,440 - Xcc-8004.927.1 0.51 -0.8
871,681 - Xcc-8004.927.1 0.73 -0.4
871,681 - Xcc-8004.927.1 0.73 +2.0
871,681 - Xcc-8004.927.1 0.73 -0.5

Or see this region's nucleotide sequence