Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4755.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4753.1 and Xcc-8004.4754.1 are separated by 122 nucleotidesXcc-8004.4754.1 and Xcc-8004.4755.1 overlap by 4 nucleotidesXcc-8004.4755.1 and Xcc-8004.4756.1 are separated by 29 nucleotides Xcc-8004.4753.1: Xcc-8004.4753.1 - TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA, at 4,523,031 to 4,523,594 Xcc-8004.4753.1 Xcc-8004.4754.1: Xcc-8004.4754.1 - FIG01211156: hypothetical protein, at 4,523,717 to 4,524,457 Xcc-8004.4754.1 Xcc-8004.4755.1: Xcc-8004.4755.1 - FIG01210453: hypothetical protein, at 4,524,454 to 4,525,098 Xcc-8004.4755.1 Xcc-8004.4756.1: Xcc-8004.4756.1 - FIG01211576: hypothetical protein, at 4,525,128 to 4,526,486 Xcc-8004.4756.1 Position (kb) 4524 4525 4526Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4523.813 kb on + strand, within Xcc-8004.4754.1at 4523.813 kb on + strand, within Xcc-8004.4754.1at 4523.813 kb on + strand, within Xcc-8004.4754.1at 4523.813 kb on + strand, within Xcc-8004.4754.1at 4523.814 kb on - strand, within Xcc-8004.4754.1at 4523.814 kb on - strand, within Xcc-8004.4754.1at 4523.814 kb on - strand, within Xcc-8004.4754.1at 4523.814 kb on - strand, within Xcc-8004.4754.1at 4523.814 kb on - strand, within Xcc-8004.4754.1at 4523.814 kb on - strand, within Xcc-8004.4754.1at 4523.827 kb on + strand, within Xcc-8004.4754.1at 4524.008 kb on + strand, within Xcc-8004.4754.1at 4524.008 kb on + strand, within Xcc-8004.4754.1at 4524.008 kb on + strand, within Xcc-8004.4754.1at 4524.008 kb on + strand, within Xcc-8004.4754.1at 4524.008 kb on + strand, within Xcc-8004.4754.1at 4524.009 kb on - strand, within Xcc-8004.4754.1at 4524.009 kb on - strand, within Xcc-8004.4754.1at 4524.009 kb on - strand, within Xcc-8004.4754.1at 4524.009 kb on - strand, within Xcc-8004.4754.1at 4524.009 kb on - strand, within Xcc-8004.4754.1at 4524.009 kb on - strand, within Xcc-8004.4754.1at 4524.038 kb on + strand, within Xcc-8004.4754.1at 4524.038 kb on + strand, within Xcc-8004.4754.1at 4524.038 kb on + strand, within Xcc-8004.4754.1at 4524.038 kb on + strand, within Xcc-8004.4754.1at 4524.039 kb on - strand, within Xcc-8004.4754.1at 4524.039 kb on - strand, within Xcc-8004.4754.1at 4524.039 kb on - strand, within Xcc-8004.4754.1at 4524.040 kb on + strand, within Xcc-8004.4754.1at 4524.040 kb on + strand, within Xcc-8004.4754.1at 4524.041 kb on - strand, within Xcc-8004.4754.1at 4524.041 kb on - strand, within Xcc-8004.4754.1at 4524.041 kb on - strand, within Xcc-8004.4754.1at 4524.041 kb on - strand, within Xcc-8004.4754.1at 4524.041 kb on - strand, within Xcc-8004.4754.1at 4524.095 kb on + strand, within Xcc-8004.4754.1at 4524.095 kb on + strand, within Xcc-8004.4754.1at 4524.095 kb on + strand, within Xcc-8004.4754.1at 4524.095 kb on + strand, within Xcc-8004.4754.1at 4524.096 kb on - strand, within Xcc-8004.4754.1at 4524.096 kb on - strand, within Xcc-8004.4754.1at 4524.096 kb on - strand, within Xcc-8004.4754.1at 4524.096 kb on - strand, within Xcc-8004.4754.1at 4524.096 kb on - strand, within Xcc-8004.4754.1at 4524.096 kb on - strand, within Xcc-8004.4754.1at 4524.096 kb on - strand, within Xcc-8004.4754.1at 4524.218 kb on + strand, within Xcc-8004.4754.1at 4524.218 kb on + strand, within Xcc-8004.4754.1at 4524.218 kb on + strand, within Xcc-8004.4754.1at 4524.246 kb on - strand, within Xcc-8004.4754.1at 4524.269 kb on + strand, within Xcc-8004.4754.1at 4524.365 kb on + strand, within Xcc-8004.4754.1at 4524.365 kb on + strand, within Xcc-8004.4754.1at 4524.365 kb on + strand, within Xcc-8004.4754.1at 4524.366 kb on - strand, within Xcc-8004.4754.1at 4524.366 kb on - strand, within Xcc-8004.4754.1at 4524.453 kb on + strandat 4524.453 kb on + strandat 4524.453 kb on + strandat 4524.453 kb on + strandat 4524.454 kb on - strandat 4524.454 kb on - strandat 4524.454 kb on - strandat 4524.520 kb on + strand, within Xcc-8004.4755.1at 4524.520 kb on + strand, within Xcc-8004.4755.1at 4524.520 kb on + strand, within Xcc-8004.4755.1at 4524.521 kb on - strand, within Xcc-8004.4755.1at 4524.521 kb on - strand, within Xcc-8004.4755.1at 4524.521 kb on - strand, within Xcc-8004.4755.1at 4524.521 kb on - strand, within Xcc-8004.4755.1at 4524.521 kb on - strand, within Xcc-8004.4755.1at 4524.521 kb on - strand, within Xcc-8004.4755.1at 4524.698 kb on + strand, within Xcc-8004.4755.1at 4524.761 kb on + strand, within Xcc-8004.4755.1at 4524.761 kb on + strand, within Xcc-8004.4755.1at 4524.761 kb on + strand, within Xcc-8004.4755.1at 4524.762 kb on - strand, within Xcc-8004.4755.1at 4524.808 kb on + strand, within Xcc-8004.4755.1at 4524.808 kb on + strand, within Xcc-8004.4755.1at 4524.809 kb on - strand, within Xcc-8004.4755.1at 4524.809 kb on - strand, within Xcc-8004.4755.1at 4524.809 kb on - strand, within Xcc-8004.4755.1at 4525.037 kb on - strandat 4525.130 kb on - strandat 4525.130 kb on - strandat 4525.178 kb on - strandat 4525.178 kb on - strandat 4525.499 kb on - strand, within Xcc-8004.4756.1at 4525.510 kb on + strand, within Xcc-8004.4756.1at 4525.510 kb on + strand, within Xcc-8004.4756.1at 4525.510 kb on + strand, within Xcc-8004.4756.1at 4525.510 kb on + strand, within Xcc-8004.4756.1at 4525.510 kb on + strand, within Xcc-8004.4756.1at 4525.510 kb on + strand, within Xcc-8004.4756.1at 4525.510 kb on + strand, within Xcc-8004.4756.1at 4525.510 kb on + strand, within Xcc-8004.4756.1at 4525.510 kb on + strand, within Xcc-8004.4756.1at 4525.510 kb on + strand, within Xcc-8004.4756.1at 4525.511 kb on - strand, within Xcc-8004.4756.1at 4525.511 kb on - strand, within Xcc-8004.4756.1at 4525.511 kb on - strand, within Xcc-8004.4756.1at 4525.511 kb on - strand, within Xcc-8004.4756.1at 4525.511 kb on - strand, within Xcc-8004.4756.1at 4525.511 kb on - strand, within Xcc-8004.4756.1at 4525.511 kb on - strand, within Xcc-8004.4756.1at 4525.511 kb on - strand, within Xcc-8004.4756.1at 4525.511 kb on - strand, within Xcc-8004.4756.1at 4525.522 kb on + strand, within Xcc-8004.4756.1at 4525.522 kb on + strand, within Xcc-8004.4756.1at 4525.522 kb on + strand, within Xcc-8004.4756.1at 4525.522 kb on + strand, within Xcc-8004.4756.1at 4525.522 kb on + strand, within Xcc-8004.4756.1at 4525.522 kb on + strand, within Xcc-8004.4756.1at 4525.523 kb on - strand, within Xcc-8004.4756.1at 4525.822 kb on + strand, within Xcc-8004.4756.1at 4525.822 kb on + strand, within Xcc-8004.4756.1at 4525.822 kb on + strand, within Xcc-8004.4756.1at 4525.822 kb on + strand, within Xcc-8004.4756.1at 4525.822 kb on + strand, within Xcc-8004.4756.1at 4525.822 kb on + strand, within Xcc-8004.4756.1at 4525.823 kb on - strand, within Xcc-8004.4756.1at 4525.823 kb on - strand, within Xcc-8004.4756.1at 4525.823 kb on - strand, within Xcc-8004.4756.1at 4525.823 kb on - strand, within Xcc-8004.4756.1at 4525.823 kb on - strand, within Xcc-8004.4756.1at 4525.823 kb on - strand, within Xcc-8004.4756.1at 4525.999 kb on + strand, within Xcc-8004.4756.1at 4525.999 kb on + strand, within Xcc-8004.4756.1at 4526.000 kb on - strand, within Xcc-8004.4756.1at 4526.000 kb on - strand, within Xcc-8004.4756.1at 4526.000 kb on - strand, within Xcc-8004.4756.1at 4526.047 kb on + strand, within Xcc-8004.4756.1at 4526.047 kb on + strand, within Xcc-8004.4756.1at 4526.047 kb on + strand, within Xcc-8004.4756.1at 4526.048 kb on - strand, within Xcc-8004.4756.1at 4526.048 kb on - strand, within Xcc-8004.4756.1at 4526.048 kb on - strand, within Xcc-8004.4756.1at 4526.048 kb on - strand, within Xcc-8004.4756.1at 4526.048 kb on - strand, within Xcc-8004.4756.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
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4,523,813 + Xcc-8004.4754.1 0.13 -2.8
4,523,813 + Xcc-8004.4754.1 0.13 -1.3
4,523,813 + Xcc-8004.4754.1 0.13 -1.6
4,523,813 + Xcc-8004.4754.1 0.13 -2.7
4,523,814 - Xcc-8004.4754.1 0.13 +0.8
4,523,814 - Xcc-8004.4754.1 0.13 -0.1
4,523,814 - Xcc-8004.4754.1 0.13 -0.1
4,523,814 - Xcc-8004.4754.1 0.13 +1.1
4,523,814 - Xcc-8004.4754.1 0.13 +0.6
4,523,814 - Xcc-8004.4754.1 0.13 +1.3
4,523,827 + Xcc-8004.4754.1 0.15 -1.7
4,524,008 + Xcc-8004.4754.1 0.39 -0.8
4,524,008 + Xcc-8004.4754.1 0.39 -2.3
4,524,008 + Xcc-8004.4754.1 0.39 +0.8
4,524,008 + Xcc-8004.4754.1 0.39 +0.4
4,524,008 + Xcc-8004.4754.1 0.39 +1.3
4,524,009 - Xcc-8004.4754.1 0.39 +1.2
4,524,009 - Xcc-8004.4754.1 0.39 +0.7
4,524,009 - Xcc-8004.4754.1 0.39 +1.5
4,524,009 - Xcc-8004.4754.1 0.39 -3.0
4,524,009 - Xcc-8004.4754.1 0.39 -2.3
4,524,009 - Xcc-8004.4754.1 0.39 -2.1
4,524,038 + Xcc-8004.4754.1 0.43 +0.1
4,524,038 + Xcc-8004.4754.1 0.43 -1.9
4,524,038 + Xcc-8004.4754.1 0.43 +1.2
4,524,038 + Xcc-8004.4754.1 0.43 -0.8
4,524,039 - Xcc-8004.4754.1 0.43 -1.3
4,524,039 - Xcc-8004.4754.1 0.43 -1.4
4,524,039 - Xcc-8004.4754.1 0.43 +0.2
4,524,040 + Xcc-8004.4754.1 0.44 -2.1
4,524,040 + Xcc-8004.4754.1 0.44 -2.9
4,524,041 - Xcc-8004.4754.1 0.44 +1.7
4,524,041 - Xcc-8004.4754.1 0.44 -0.8
4,524,041 - Xcc-8004.4754.1 0.44 +0.4
4,524,041 - Xcc-8004.4754.1 0.44 +1.6
4,524,041 - Xcc-8004.4754.1 0.44 -1.2
4,524,095 + Xcc-8004.4754.1 0.51 +2.2
4,524,095 + Xcc-8004.4754.1 0.51 +1.1
4,524,095 + Xcc-8004.4754.1 0.51 -0.1
4,524,095 + Xcc-8004.4754.1 0.51 +0.4
4,524,096 - Xcc-8004.4754.1 0.51 +0.3
4,524,096 - Xcc-8004.4754.1 0.51 +0.5
4,524,096 - Xcc-8004.4754.1 0.51 -1.5
4,524,096 - Xcc-8004.4754.1 0.51 -2.1
4,524,096 - Xcc-8004.4754.1 0.51 +1.6
4,524,096 - Xcc-8004.4754.1 0.51 -0.0
4,524,096 - Xcc-8004.4754.1 0.51 -0.9
4,524,218 + Xcc-8004.4754.1 0.68 -0.4
4,524,218 + Xcc-8004.4754.1 0.68 -0.2
4,524,218 + Xcc-8004.4754.1 0.68 -2.8
4,524,246 - Xcc-8004.4754.1 0.71 -1.0
4,524,269 + Xcc-8004.4754.1 0.74 +0.9
4,524,365 + Xcc-8004.4754.1 0.87 +1.7
4,524,365 + Xcc-8004.4754.1 0.87 +2.9
4,524,365 + Xcc-8004.4754.1 0.87 -0.6
4,524,366 - Xcc-8004.4754.1 0.88 +1.0
4,524,366 - Xcc-8004.4754.1 0.88 -0.2
4,524,453 + -0.1
4,524,453 + +0.3
4,524,453 + +0.8
4,524,453 + -0.2
4,524,454 - -2.3
4,524,454 - -0.6
4,524,454 - +0.3
4,524,520 + Xcc-8004.4755.1 0.10 -0.7
4,524,520 + Xcc-8004.4755.1 0.10 -0.4
4,524,520 + Xcc-8004.4755.1 0.10 -1.0
4,524,521 - Xcc-8004.4755.1 0.10 +1.2
4,524,521 - Xcc-8004.4755.1 0.10 -1.5
4,524,521 - Xcc-8004.4755.1 0.10 +1.4
4,524,521 - Xcc-8004.4755.1 0.10 -1.9
4,524,521 - Xcc-8004.4755.1 0.10 -0.7
4,524,521 - Xcc-8004.4755.1 0.10 -1.5
4,524,698 + Xcc-8004.4755.1 0.38 -0.2
4,524,761 + Xcc-8004.4755.1 0.48 +0.9
4,524,761 + Xcc-8004.4755.1 0.48 -1.4
4,524,761 + Xcc-8004.4755.1 0.48 +1.1
4,524,762 - Xcc-8004.4755.1 0.48 +0.6
4,524,808 + Xcc-8004.4755.1 0.55 -3.0
4,524,808 + Xcc-8004.4755.1 0.55 +1.0
4,524,809 - Xcc-8004.4755.1 0.55 +0.1
4,524,809 - Xcc-8004.4755.1 0.55 -2.7
4,524,809 - Xcc-8004.4755.1 0.55 +1.8
4,525,037 - +0.4
4,525,130 - +3.0
4,525,130 - +1.4
4,525,178 - +1.4
4,525,178 - -2.5
4,525,499 - Xcc-8004.4756.1 0.27 -1.5
4,525,510 + Xcc-8004.4756.1 0.28 -0.4
4,525,510 + Xcc-8004.4756.1 0.28 +0.4
4,525,510 + Xcc-8004.4756.1 0.28 -0.6
4,525,510 + Xcc-8004.4756.1 0.28 -0.1
4,525,510 + Xcc-8004.4756.1 0.28 -0.0
4,525,510 + Xcc-8004.4756.1 0.28 -1.5
4,525,510 + Xcc-8004.4756.1 0.28 +0.7
4,525,510 + Xcc-8004.4756.1 0.28 +0.7
4,525,510 + Xcc-8004.4756.1 0.28 -1.7
4,525,510 + Xcc-8004.4756.1 0.28 +0.1
4,525,511 - Xcc-8004.4756.1 0.28 +1.5
4,525,511 - Xcc-8004.4756.1 0.28 +0.7
4,525,511 - Xcc-8004.4756.1 0.28 -2.9
4,525,511 - Xcc-8004.4756.1 0.28 -0.4
4,525,511 - Xcc-8004.4756.1 0.28 -1.5
4,525,511 - Xcc-8004.4756.1 0.28 -0.4
4,525,511 - Xcc-8004.4756.1 0.28 -3.5
4,525,511 - Xcc-8004.4756.1 0.28 -1.4
4,525,511 - Xcc-8004.4756.1 0.28 +0.7
4,525,522 + Xcc-8004.4756.1 0.29 +0.7
4,525,522 + Xcc-8004.4756.1 0.29 -2.8
4,525,522 + Xcc-8004.4756.1 0.29 -1.9
4,525,522 + Xcc-8004.4756.1 0.29 -1.5
4,525,522 + Xcc-8004.4756.1 0.29 -0.3
4,525,522 + Xcc-8004.4756.1 0.29 +0.4
4,525,523 - Xcc-8004.4756.1 0.29 +0.3
4,525,822 + Xcc-8004.4756.1 0.51 +0.5
4,525,822 + Xcc-8004.4756.1 0.51 +0.6
4,525,822 + Xcc-8004.4756.1 0.51 -1.4
4,525,822 + Xcc-8004.4756.1 0.51 +0.4
4,525,822 + Xcc-8004.4756.1 0.51 +0.8
4,525,822 + Xcc-8004.4756.1 0.51 +0.3
4,525,823 - Xcc-8004.4756.1 0.51 +0.5
4,525,823 - Xcc-8004.4756.1 0.51 -1.5
4,525,823 - Xcc-8004.4756.1 0.51 -1.5
4,525,823 - Xcc-8004.4756.1 0.51 -1.7
4,525,823 - Xcc-8004.4756.1 0.51 +0.0
4,525,823 - Xcc-8004.4756.1 0.51 -0.3
4,525,999 + Xcc-8004.4756.1 0.64 -0.3
4,525,999 + Xcc-8004.4756.1 0.64 +1.6
4,526,000 - Xcc-8004.4756.1 0.64 +1.5
4,526,000 - Xcc-8004.4756.1 0.64 -1.4
4,526,000 - Xcc-8004.4756.1 0.64 +0.1
4,526,047 + Xcc-8004.4756.1 0.68 +0.4
4,526,047 + Xcc-8004.4756.1 0.68 +1.1
4,526,047 + Xcc-8004.4756.1 0.68 -0.9
4,526,048 - Xcc-8004.4756.1 0.68 -2.7
4,526,048 - Xcc-8004.4756.1 0.68 -1.6
4,526,048 - Xcc-8004.4756.1 0.68 +0.1
4,526,048 - Xcc-8004.4756.1 0.68 +0.6
4,526,048 - Xcc-8004.4756.1 0.68 -1.7

Or see this region's nucleotide sequence