Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.464.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.462.1 and Xcc-8004.463.1 are separated by 32 nucleotidesXcc-8004.463.1 and Xcc-8004.464.1 are separated by 36 nucleotidesXcc-8004.464.1 and Xcc-8004.465.1 are separated by 27 nucleotides Xcc-8004.462.1: Xcc-8004.462.1 - hypothetical protein, at 424,465 to 424,875 Xcc-8004.462.1 Xcc-8004.463.1: Xcc-8004.463.1 - 2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase (EC 1.3.1.-), at 424,908 to 425,675 Xcc-8004.463.1 Xcc-8004.464.1: Xcc-8004.464.1 - Putative benzaldehyde dehydrogenase oxidoreductase protein (EC 1.2.1.28), at 425,712 to 427,193 Xcc-8004.464.1 Xcc-8004.465.1: Xcc-8004.465.1 - Transcriptional regulator PobR, AraC family, at 427,221 to 428,117 Xcc-8004.465.1 Position (kb) 425 426 427 428Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 424.722 kb on + strand, within Xcc-8004.462.1at 424.874 kb on - strandat 425.030 kb on + strand, within Xcc-8004.463.1at 425.030 kb on + strand, within Xcc-8004.463.1at 425.030 kb on + strand, within Xcc-8004.463.1at 425.182 kb on - strand, within Xcc-8004.463.1at 425.377 kb on - strand, within Xcc-8004.463.1at 425.673 kb on + strandat 425.674 kb on - strandat 425.674 kb on - strandat 425.674 kb on - strandat 425.771 kb on + strandat 425.772 kb on - strandat 426.072 kb on + strand, within Xcc-8004.464.1at 426.072 kb on + strand, within Xcc-8004.464.1at 426.073 kb on - strand, within Xcc-8004.464.1at 426.073 kb on - strand, within Xcc-8004.464.1at 426.073 kb on - strand, within Xcc-8004.464.1at 426.075 kb on + strand, within Xcc-8004.464.1at 426.075 kb on + strand, within Xcc-8004.464.1at 426.075 kb on + strand, within Xcc-8004.464.1at 426.075 kb on + strand, within Xcc-8004.464.1at 426.076 kb on - strand, within Xcc-8004.464.1at 426.285 kb on + strand, within Xcc-8004.464.1at 426.286 kb on - strand, within Xcc-8004.464.1at 426.286 kb on - strand, within Xcc-8004.464.1at 426.288 kb on - strand, within Xcc-8004.464.1at 426.331 kb on + strand, within Xcc-8004.464.1at 426.503 kb on + strand, within Xcc-8004.464.1at 426.503 kb on + strand, within Xcc-8004.464.1at 426.503 kb on + strand, within Xcc-8004.464.1at 426.570 kb on + strand, within Xcc-8004.464.1at 426.571 kb on - strand, within Xcc-8004.464.1at 426.819 kb on + strand, within Xcc-8004.464.1at 426.820 kb on - strand, within Xcc-8004.464.1at 426.820 kb on - strand, within Xcc-8004.464.1at 426.820 kb on - strand, within Xcc-8004.464.1at 426.951 kb on + strand, within Xcc-8004.464.1at 426.951 kb on + strand, within Xcc-8004.464.1at 427.137 kb on + strandat 427.137 kb on + strandat 427.138 kb on - strandat 427.138 kb on - strandat 427.138 kb on - strandat 427.466 kb on - strand, within Xcc-8004.465.1at 427.728 kb on + strand, within Xcc-8004.465.1at 427.812 kb on - strand, within Xcc-8004.465.1at 427.939 kb on + strand, within Xcc-8004.465.1at 427.940 kb on - strand, within Xcc-8004.465.1at 428.060 kb on - strandat 428.094 kb on + strandat 428.099 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
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424,722 + Xcc-8004.462.1 0.63 +0.4
424,874 - +0.8
425,030 + Xcc-8004.463.1 0.16 +0.5
425,030 + Xcc-8004.463.1 0.16 +0.5
425,030 + Xcc-8004.463.1 0.16 -0.2
425,182 - Xcc-8004.463.1 0.36 +0.2
425,377 - Xcc-8004.463.1 0.61 +1.0
425,673 + +1.2
425,674 - +0.0
425,674 - +1.4
425,674 - -1.4
425,771 + +1.7
425,772 - -1.4
426,072 + Xcc-8004.464.1 0.24 +0.7
426,072 + Xcc-8004.464.1 0.24 +0.3
426,073 - Xcc-8004.464.1 0.24 +0.9
426,073 - Xcc-8004.464.1 0.24 +1.0
426,073 - Xcc-8004.464.1 0.24 +0.8
426,075 + Xcc-8004.464.1 0.24 -0.4
426,075 + Xcc-8004.464.1 0.24 +2.0
426,075 + Xcc-8004.464.1 0.24 +2.0
426,075 + Xcc-8004.464.1 0.24 +0.5
426,076 - Xcc-8004.464.1 0.25 +2.0
426,285 + Xcc-8004.464.1 0.39 -0.8
426,286 - Xcc-8004.464.1 0.39 -0.6
426,286 - Xcc-8004.464.1 0.39 +0.6
426,288 - Xcc-8004.464.1 0.39 +0.1
426,331 + Xcc-8004.464.1 0.42 +1.0
426,503 + Xcc-8004.464.1 0.53 +1.0
426,503 + Xcc-8004.464.1 0.53 +1.9
426,503 + Xcc-8004.464.1 0.53 -0.8
426,570 + Xcc-8004.464.1 0.58 +2.1
426,571 - Xcc-8004.464.1 0.58 -0.3
426,819 + Xcc-8004.464.1 0.75 -0.4
426,820 - Xcc-8004.464.1 0.75 -0.2
426,820 - Xcc-8004.464.1 0.75 +0.5
426,820 - Xcc-8004.464.1 0.75 +1.1
426,951 + Xcc-8004.464.1 0.84 -1.9
426,951 + Xcc-8004.464.1 0.84 -0.5
427,137 + -2.9
427,137 + -0.3
427,138 - -0.6
427,138 - -2.0
427,138 - -1.2
427,466 - Xcc-8004.465.1 0.27 +1.3
427,728 + Xcc-8004.465.1 0.57 +1.6
427,812 - Xcc-8004.465.1 0.66 +0.9
427,939 + Xcc-8004.465.1 0.80 +0.1
427,940 - Xcc-8004.465.1 0.80 +3.7
428,060 - +1.8
428,094 + -3.0
428,099 + -1.3

Or see this region's nucleotide sequence