Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.462.1 and Xcc-8004.463.1 are separated by 32 nucleotides Xcc-8004.463.1 and Xcc-8004.464.1 are separated by 36 nucleotides Xcc-8004.464.1 and Xcc-8004.465.1 are separated by 27 nucleotides
Xcc-8004.462.1: Xcc-8004.462.1 - hypothetical protein, at 424,465 to 424,875
Xcc-8004.462.1
Xcc-8004.463.1: Xcc-8004.463.1 - 2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase (EC 1.3.1.-), at 424,908 to 425,675
Xcc-8004.463.1
Xcc-8004.464.1: Xcc-8004.464.1 - Putative benzaldehyde dehydrogenase oxidoreductase protein (EC 1.2.1.28), at 425,712 to 427,193
Xcc-8004.464.1
Xcc-8004.465.1: Xcc-8004.465.1 - Transcriptional regulator PobR, AraC family, at 427,221 to 428,117
Xcc-8004.465.1
Position (kb) 425
426
427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 424.722 kb on + strand, within Xcc-8004.462.1 at 424.874 kb on - strand at 425.030 kb on + strand, within Xcc-8004.463.1 at 425.030 kb on + strand, within Xcc-8004.463.1 at 425.030 kb on + strand, within Xcc-8004.463.1 at 425.182 kb on - strand, within Xcc-8004.463.1 at 425.377 kb on - strand, within Xcc-8004.463.1 at 425.673 kb on + strand at 425.674 kb on - strand at 425.674 kb on - strand at 425.674 kb on - strand at 425.771 kb on + strand at 425.772 kb on - strand at 426.072 kb on + strand, within Xcc-8004.464.1 at 426.072 kb on + strand, within Xcc-8004.464.1 at 426.073 kb on - strand, within Xcc-8004.464.1 at 426.073 kb on - strand, within Xcc-8004.464.1 at 426.073 kb on - strand, within Xcc-8004.464.1 at 426.075 kb on + strand, within Xcc-8004.464.1 at 426.075 kb on + strand, within Xcc-8004.464.1 at 426.075 kb on + strand, within Xcc-8004.464.1 at 426.075 kb on + strand, within Xcc-8004.464.1 at 426.076 kb on - strand, within Xcc-8004.464.1 at 426.285 kb on + strand, within Xcc-8004.464.1 at 426.286 kb on - strand, within Xcc-8004.464.1 at 426.286 kb on - strand, within Xcc-8004.464.1 at 426.288 kb on - strand, within Xcc-8004.464.1 at 426.331 kb on + strand, within Xcc-8004.464.1 at 426.503 kb on + strand, within Xcc-8004.464.1 at 426.503 kb on + strand, within Xcc-8004.464.1 at 426.503 kb on + strand, within Xcc-8004.464.1 at 426.570 kb on + strand, within Xcc-8004.464.1 at 426.571 kb on - strand, within Xcc-8004.464.1 at 426.819 kb on + strand, within Xcc-8004.464.1 at 426.820 kb on - strand, within Xcc-8004.464.1 at 426.820 kb on - strand, within Xcc-8004.464.1 at 426.820 kb on - strand, within Xcc-8004.464.1 at 426.951 kb on + strand, within Xcc-8004.464.1 at 426.951 kb on + strand, within Xcc-8004.464.1 at 427.137 kb on + strand at 427.137 kb on + strand at 427.138 kb on - strand at 427.138 kb on - strand at 427.138 kb on - strand at 427.466 kb on - strand, within Xcc-8004.465.1 at 427.728 kb on + strand, within Xcc-8004.465.1 at 427.812 kb on - strand, within Xcc-8004.465.1 at 427.939 kb on + strand, within Xcc-8004.465.1 at 427.940 kb on - strand, within Xcc-8004.465.1 at 428.060 kb on - strand at 428.094 kb on + strand at 428.099 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days remove 424,722 + Xcc-8004.462.1 0.63 +0.4 424,874 - +0.8 425,030 + Xcc-8004.463.1 0.16 +0.5 425,030 + Xcc-8004.463.1 0.16 +0.5 425,030 + Xcc-8004.463.1 0.16 -0.2 425,182 - Xcc-8004.463.1 0.36 +0.2 425,377 - Xcc-8004.463.1 0.61 +1.0 425,673 + +1.2 425,674 - +0.0 425,674 - +1.4 425,674 - -1.4 425,771 + +1.7 425,772 - -1.4 426,072 + Xcc-8004.464.1 0.24 +0.7 426,072 + Xcc-8004.464.1 0.24 +0.3 426,073 - Xcc-8004.464.1 0.24 +0.9 426,073 - Xcc-8004.464.1 0.24 +1.0 426,073 - Xcc-8004.464.1 0.24 +0.8 426,075 + Xcc-8004.464.1 0.24 -0.4 426,075 + Xcc-8004.464.1 0.24 +2.0 426,075 + Xcc-8004.464.1 0.24 +2.0 426,075 + Xcc-8004.464.1 0.24 +0.5 426,076 - Xcc-8004.464.1 0.25 +2.0 426,285 + Xcc-8004.464.1 0.39 -0.8 426,286 - Xcc-8004.464.1 0.39 -0.6 426,286 - Xcc-8004.464.1 0.39 +0.6 426,288 - Xcc-8004.464.1 0.39 +0.1 426,331 + Xcc-8004.464.1 0.42 +1.0 426,503 + Xcc-8004.464.1 0.53 +1.0 426,503 + Xcc-8004.464.1 0.53 +1.9 426,503 + Xcc-8004.464.1 0.53 -0.8 426,570 + Xcc-8004.464.1 0.58 +2.1 426,571 - Xcc-8004.464.1 0.58 -0.3 426,819 + Xcc-8004.464.1 0.75 -0.4 426,820 - Xcc-8004.464.1 0.75 -0.2 426,820 - Xcc-8004.464.1 0.75 +0.5 426,820 - Xcc-8004.464.1 0.75 +1.1 426,951 + Xcc-8004.464.1 0.84 -1.9 426,951 + Xcc-8004.464.1 0.84 -0.5 427,137 + -2.9 427,137 + -0.3 427,138 - -0.6 427,138 - -2.0 427,138 - -1.2 427,466 - Xcc-8004.465.1 0.27 +1.3 427,728 + Xcc-8004.465.1 0.57 +1.6 427,812 - Xcc-8004.465.1 0.66 +0.9 427,939 + Xcc-8004.465.1 0.80 +0.1 427,940 - Xcc-8004.465.1 0.80 +3.7 428,060 - +1.8 428,094 + -3.0 428,099 + -1.3
Or see this region's nucleotide sequence