Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4335.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4334.1 and Xcc-8004.4335.1 are separated by 161 nucleotidesXcc-8004.4335.1 and Xcc-8004.4336.1 are separated by 68 nucleotidesXcc-8004.4336.1 and Xcc-8004.4337.1 are separated by 32 nucleotides Xcc-8004.4334.1: Xcc-8004.4334.1 - putative; ORF located using Glimmer/Genemark, at 4,152,056 to 4,152,295 Xcc-8004.4334.1 Xcc-8004.4335.1: Xcc-8004.4335.1 - FIG01210530: hypothetical protein, at 4,152,457 to 4,153,755 Xcc-8004.4335.1 Xcc-8004.4336.1: Xcc-8004.4336.1 - 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20), at 4,153,824 to 4,154,681 Xcc-8004.4336.1 Xcc-8004.4337.1: Xcc-8004.4337.1 - FIG01210643: hypothetical protein, at 4,154,714 to 4,155,433 Xcc-8004.4337.1 Position (kb) 4152 4153 4154Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4151.485 kb on + strandat 4151.486 kb on - strandat 4151.486 kb on - strandat 4151.486 kb on - strandat 4151.624 kb on + strandat 4151.638 kb on + strandat 4151.639 kb on - strandat 4151.639 kb on - strandat 4151.986 kb on - strandat 4152.273 kb on - strandat 4152.273 kb on - strandat 4152.334 kb on + strandat 4152.335 kb on - strandat 4152.423 kb on + strandat 4152.423 kb on + strandat 4152.423 kb on + strandat 4152.424 kb on - strandat 4152.424 kb on - strandat 4152.424 kb on - strandat 4152.424 kb on - strandat 4152.424 kb on - strandat 4152.784 kb on + strand, within Xcc-8004.4335.1at 4152.901 kb on + strand, within Xcc-8004.4335.1at 4152.901 kb on + strand, within Xcc-8004.4335.1at 4152.901 kb on + strand, within Xcc-8004.4335.1at 4152.902 kb on - strand, within Xcc-8004.4335.1at 4153.066 kb on + strand, within Xcc-8004.4335.1at 4153.123 kb on + strand, within Xcc-8004.4335.1at 4153.123 kb on + strand, within Xcc-8004.4335.1at 4153.123 kb on + strand, within Xcc-8004.4335.1at 4153.124 kb on - strand, within Xcc-8004.4335.1at 4153.124 kb on - strand, within Xcc-8004.4335.1at 4153.124 kb on - strand, within Xcc-8004.4335.1at 4153.257 kb on + strand, within Xcc-8004.4335.1at 4153.325 kb on - strand, within Xcc-8004.4335.1at 4153.528 kb on + strand, within Xcc-8004.4335.1at 4153.529 kb on - strand, within Xcc-8004.4335.1at 4153.541 kb on + strand, within Xcc-8004.4335.1at 4153.541 kb on + strand, within Xcc-8004.4335.1at 4153.541 kb on + strand, within Xcc-8004.4335.1at 4153.541 kb on + strand, within Xcc-8004.4335.1at 4153.541 kb on + strand, within Xcc-8004.4335.1at 4153.541 kb on + strand, within Xcc-8004.4335.1at 4153.541 kb on + strand, within Xcc-8004.4335.1at 4153.541 kb on + strand, within Xcc-8004.4335.1at 4153.675 kb on + strandat 4153.721 kb on - strandat 4153.743 kb on - strandat 4153.753 kb on + strandat 4153.754 kb on - strandat 4153.796 kb on + strandat 4153.796 kb on + strandat 4153.796 kb on + strandat 4153.797 kb on - strandat 4153.797 kb on - strandat 4153.821 kb on - strandat 4153.823 kb on + strandat 4153.878 kb on + strandat 4153.879 kb on - strandat 4153.941 kb on + strand, within Xcc-8004.4336.1at 4153.942 kb on - strand, within Xcc-8004.4336.1at 4153.953 kb on + strand, within Xcc-8004.4336.1at 4153.953 kb on + strand, within Xcc-8004.4336.1at 4153.953 kb on + strand, within Xcc-8004.4336.1at 4153.953 kb on + strand, within Xcc-8004.4336.1at 4153.954 kb on - strand, within Xcc-8004.4336.1at 4153.954 kb on - strand, within Xcc-8004.4336.1at 4153.954 kb on - strand, within Xcc-8004.4336.1at 4153.995 kb on + strand, within Xcc-8004.4336.1at 4153.995 kb on + strand, within Xcc-8004.4336.1at 4153.995 kb on + strand, within Xcc-8004.4336.1at 4153.995 kb on + strand, within Xcc-8004.4336.1at 4153.996 kb on - strand, within Xcc-8004.4336.1at 4153.996 kb on - strand, within Xcc-8004.4336.1at 4154.056 kb on + strand, within Xcc-8004.4336.1at 4154.056 kb on + strand, within Xcc-8004.4336.1at 4154.056 kb on + strand, within Xcc-8004.4336.1at 4154.057 kb on - strand, within Xcc-8004.4336.1at 4154.057 kb on - strand, within Xcc-8004.4336.1at 4154.107 kb on - strand, within Xcc-8004.4336.1at 4154.188 kb on - strand, within Xcc-8004.4336.1at 4154.188 kb on - strand, within Xcc-8004.4336.1at 4154.188 kb on - strand, within Xcc-8004.4336.1at 4154.304 kb on + strand, within Xcc-8004.4336.1at 4154.305 kb on - strand, within Xcc-8004.4336.1at 4154.305 kb on - strand, within Xcc-8004.4336.1at 4154.352 kb on + strand, within Xcc-8004.4336.1at 4154.352 kb on + strand, within Xcc-8004.4336.1at 4154.353 kb on - strand, within Xcc-8004.4336.1at 4154.353 kb on - strand, within Xcc-8004.4336.1at 4154.353 kb on - strand, within Xcc-8004.4336.1at 4154.358 kb on + strand, within Xcc-8004.4336.1at 4154.358 kb on + strand, within Xcc-8004.4336.1at 4154.358 kb on + strand, within Xcc-8004.4336.1at 4154.359 kb on - strand, within Xcc-8004.4336.1at 4154.359 kb on - strand, within Xcc-8004.4336.1at 4154.373 kb on + strand, within Xcc-8004.4336.1at 4154.373 kb on + strand, within Xcc-8004.4336.1at 4154.373 kb on + strand, within Xcc-8004.4336.1at 4154.374 kb on - strand, within Xcc-8004.4336.1at 4154.374 kb on - strand, within Xcc-8004.4336.1at 4154.526 kb on + strand, within Xcc-8004.4336.1at 4154.527 kb on - strand, within Xcc-8004.4336.1at 4154.625 kb on + strandat 4154.626 kb on - strandat 4154.626 kb on - strandat 4154.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
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4,151,485 + +0.8
4,151,486 - +1.0
4,151,486 - +0.8
4,151,486 - +0.2
4,151,624 + +0.1
4,151,638 + -2.6
4,151,639 - +1.4
4,151,639 - +0.7
4,151,986 - -1.8
4,152,273 - -3.1
4,152,273 - -2.0
4,152,334 + -1.4
4,152,335 - -1.2
4,152,423 + -0.7
4,152,423 + -0.8
4,152,423 + -2.0
4,152,424 - -2.8
4,152,424 - -0.8
4,152,424 - -2.0
4,152,424 - -0.8
4,152,424 - -2.2
4,152,784 + Xcc-8004.4335.1 0.25 -1.2
4,152,901 + Xcc-8004.4335.1 0.34 +1.4
4,152,901 + Xcc-8004.4335.1 0.34 -0.9
4,152,901 + Xcc-8004.4335.1 0.34 +1.0
4,152,902 - Xcc-8004.4335.1 0.34 +0.2
4,153,066 + Xcc-8004.4335.1 0.47 +0.7
4,153,123 + Xcc-8004.4335.1 0.51 -0.0
4,153,123 + Xcc-8004.4335.1 0.51 -0.9
4,153,123 + Xcc-8004.4335.1 0.51 -1.2
4,153,124 - Xcc-8004.4335.1 0.51 -0.0
4,153,124 - Xcc-8004.4335.1 0.51 -0.3
4,153,124 - Xcc-8004.4335.1 0.51 -0.7
4,153,257 + Xcc-8004.4335.1 0.62 -1.4
4,153,325 - Xcc-8004.4335.1 0.67 -0.5
4,153,528 + Xcc-8004.4335.1 0.82 -0.4
4,153,529 - Xcc-8004.4335.1 0.83 -0.6
4,153,541 + Xcc-8004.4335.1 0.83 -2.7
4,153,541 + Xcc-8004.4335.1 0.83 -1.4
4,153,541 + Xcc-8004.4335.1 0.83 +2.1
4,153,541 + Xcc-8004.4335.1 0.83 -2.7
4,153,541 + Xcc-8004.4335.1 0.83 -0.6
4,153,541 + Xcc-8004.4335.1 0.83 -0.5
4,153,541 + Xcc-8004.4335.1 0.83 +0.6
4,153,541 + Xcc-8004.4335.1 0.83 -1.8
4,153,675 + +0.8
4,153,721 - +0.7
4,153,743 - +0.4
4,153,753 + -3.3
4,153,754 - +1.7
4,153,796 + +0.2
4,153,796 + +0.4
4,153,796 + -2.5
4,153,797 - -1.9
4,153,797 - -2.9
4,153,821 - -1.6
4,153,823 + +4.3
4,153,878 + -1.2
4,153,879 - -1.3
4,153,941 + Xcc-8004.4336.1 0.14 -0.9
4,153,942 - Xcc-8004.4336.1 0.14 +1.1
4,153,953 + Xcc-8004.4336.1 0.15 -2.2
4,153,953 + Xcc-8004.4336.1 0.15 +0.5
4,153,953 + Xcc-8004.4336.1 0.15 +1.0
4,153,953 + Xcc-8004.4336.1 0.15 -1.0
4,153,954 - Xcc-8004.4336.1 0.15 +1.3
4,153,954 - Xcc-8004.4336.1 0.15 -0.2
4,153,954 - Xcc-8004.4336.1 0.15 -0.9
4,153,995 + Xcc-8004.4336.1 0.20 +0.4
4,153,995 + Xcc-8004.4336.1 0.20 -0.8
4,153,995 + Xcc-8004.4336.1 0.20 +1.2
4,153,995 + Xcc-8004.4336.1 0.20 +0.9
4,153,996 - Xcc-8004.4336.1 0.20 -0.6
4,153,996 - Xcc-8004.4336.1 0.20 +0.5
4,154,056 + Xcc-8004.4336.1 0.27 -1.3
4,154,056 + Xcc-8004.4336.1 0.27 +0.6
4,154,056 + Xcc-8004.4336.1 0.27 -1.5
4,154,057 - Xcc-8004.4336.1 0.27 +0.8
4,154,057 - Xcc-8004.4336.1 0.27 +2.5
4,154,107 - Xcc-8004.4336.1 0.33 +1.0
4,154,188 - Xcc-8004.4336.1 0.42 -2.6
4,154,188 - Xcc-8004.4336.1 0.42 -1.9
4,154,188 - Xcc-8004.4336.1 0.42 -0.7
4,154,304 + Xcc-8004.4336.1 0.56 -1.4
4,154,305 - Xcc-8004.4336.1 0.56 -2.2
4,154,305 - Xcc-8004.4336.1 0.56 -0.5
4,154,352 + Xcc-8004.4336.1 0.62 +0.7
4,154,352 + Xcc-8004.4336.1 0.62 +0.8
4,154,353 - Xcc-8004.4336.1 0.62 +1.5
4,154,353 - Xcc-8004.4336.1 0.62 +1.3
4,154,353 - Xcc-8004.4336.1 0.62 +0.8
4,154,358 + Xcc-8004.4336.1 0.62 +0.2
4,154,358 + Xcc-8004.4336.1 0.62 -0.3
4,154,358 + Xcc-8004.4336.1 0.62 +1.6
4,154,359 - Xcc-8004.4336.1 0.62 +0.3
4,154,359 - Xcc-8004.4336.1 0.62 +1.3
4,154,373 + Xcc-8004.4336.1 0.64 +0.8
4,154,373 + Xcc-8004.4336.1 0.64 +0.9
4,154,373 + Xcc-8004.4336.1 0.64 +1.2
4,154,374 - Xcc-8004.4336.1 0.64 +0.0
4,154,374 - Xcc-8004.4336.1 0.64 -1.1
4,154,526 + Xcc-8004.4336.1 0.82 -1.7
4,154,527 - Xcc-8004.4336.1 0.82 +0.9
4,154,625 + +2.1
4,154,626 - -1.0
4,154,626 - +0.8
4,154,626 - -0.3

Or see this region's nucleotide sequence