Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.414.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.412.1 and Xcc-8004.413.1 overlap by 4 nucleotidesXcc-8004.413.1 and Xcc-8004.414.1 are separated by 69 nucleotidesXcc-8004.414.1 and Xcc-8004.415.1 are separated by 153 nucleotides Xcc-8004.412.1: Xcc-8004.412.1 - Putative protein-S-isoprenylcysteine methyltransferase, at 399,351 to 399,899 Xcc-8004.412.1 Xcc-8004.413.1: Xcc-8004.413.1 - FIG01211305: hypothetical protein, at 399,896 to 400,438 Xcc-8004.413.1 Xcc-8004.414.1: Xcc-8004.414.1 - putative; ORF located using Glimmer/Genemark, at 400,508 to 401,038 Xcc-8004.414.1 Xcc-8004.415.1: Xcc-8004.415.1 - putative; ORF located using Glimmer/Genemark, at 401,192 to 401,983 Xcc-8004.415.1 Position (kb) 400 401 402Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 399.535 kb on + strand, within Xcc-8004.412.1at 399.535 kb on + strand, within Xcc-8004.412.1at 399.536 kb on - strand, within Xcc-8004.412.1at 399.536 kb on - strand, within Xcc-8004.412.1at 399.553 kb on + strand, within Xcc-8004.412.1at 399.554 kb on - strand, within Xcc-8004.412.1at 399.767 kb on + strand, within Xcc-8004.412.1at 399.926 kb on + strandat 399.926 kb on + strandat 399.926 kb on + strandat 399.996 kb on + strand, within Xcc-8004.413.1at 399.996 kb on + strand, within Xcc-8004.413.1at 400.086 kb on + strand, within Xcc-8004.413.1at 400.086 kb on + strand, within Xcc-8004.413.1at 400.087 kb on - strand, within Xcc-8004.413.1at 400.087 kb on - strand, within Xcc-8004.413.1at 400.211 kb on + strand, within Xcc-8004.413.1at 400.211 kb on + strand, within Xcc-8004.413.1at 400.212 kb on - strand, within Xcc-8004.413.1at 400.212 kb on - strand, within Xcc-8004.413.1at 400.212 kb on - strand, within Xcc-8004.413.1at 400.264 kb on + strand, within Xcc-8004.413.1at 400.264 kb on + strand, within Xcc-8004.413.1at 400.265 kb on - strand, within Xcc-8004.413.1at 400.317 kb on + strand, within Xcc-8004.413.1at 400.318 kb on - strand, within Xcc-8004.413.1at 400.318 kb on - strand, within Xcc-8004.413.1at 400.509 kb on + strandat 400.561 kb on + strand, within Xcc-8004.414.1at 400.562 kb on - strand, within Xcc-8004.414.1at 400.562 kb on - strand, within Xcc-8004.414.1at 400.737 kb on - strand, within Xcc-8004.414.1at 400.810 kb on + strand, within Xcc-8004.414.1at 400.828 kb on - strand, within Xcc-8004.414.1at 400.860 kb on + strand, within Xcc-8004.414.1at 400.860 kb on + strand, within Xcc-8004.414.1at 400.861 kb on - strand, within Xcc-8004.414.1at 400.864 kb on + strand, within Xcc-8004.414.1at 400.864 kb on + strand, within Xcc-8004.414.1at 400.864 kb on + strand, within Xcc-8004.414.1at 400.926 kb on - strand, within Xcc-8004.414.1at 400.958 kb on - strand, within Xcc-8004.414.1at 400.958 kb on - strand, within Xcc-8004.414.1at 401.026 kb on + strandat 401.105 kb on - strandat 401.105 kb on - strandat 401.146 kb on + strandat 401.147 kb on - strandat 401.157 kb on - strandat 401.178 kb on + strandat 401.209 kb on + strandat 401.209 kb on + strandat 401.238 kb on + strandat 401.238 kb on + strandat 401.238 kb on + strandat 401.239 kb on - strandat 401.239 kb on - strandat 401.239 kb on - strandat 401.248 kb on - strandat 401.251 kb on - strandat 401.293 kb on - strand, within Xcc-8004.415.1at 401.329 kb on + strand, within Xcc-8004.415.1at 401.330 kb on - strand, within Xcc-8004.415.1at 401.338 kb on - strand, within Xcc-8004.415.1at 401.454 kb on + strand, within Xcc-8004.415.1at 401.454 kb on + strand, within Xcc-8004.415.1at 401.455 kb on - strand, within Xcc-8004.415.1at 401.455 kb on - strand, within Xcc-8004.415.1at 401.479 kb on - strand, within Xcc-8004.415.1at 401.576 kb on + strand, within Xcc-8004.415.1at 401.629 kb on + strand, within Xcc-8004.415.1at 401.630 kb on - strand, within Xcc-8004.415.1at 401.948 kb on + strandat 401.998 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
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399,535 + Xcc-8004.412.1 0.34 +0.5
399,535 + Xcc-8004.412.1 0.34 -1.7
399,536 - Xcc-8004.412.1 0.34 -0.3
399,536 - Xcc-8004.412.1 0.34 +1.5
399,553 + Xcc-8004.412.1 0.37 +3.1
399,554 - Xcc-8004.412.1 0.37 +2.2
399,767 + Xcc-8004.412.1 0.76 -2.6
399,926 + -2.6
399,926 + +0.3
399,926 + -1.2
399,996 + Xcc-8004.413.1 0.18 +0.4
399,996 + Xcc-8004.413.1 0.18 -0.3
400,086 + Xcc-8004.413.1 0.35 +1.6
400,086 + Xcc-8004.413.1 0.35 -3.3
400,087 - Xcc-8004.413.1 0.35 +1.8
400,087 - Xcc-8004.413.1 0.35 +0.5
400,211 + Xcc-8004.413.1 0.58 +1.1
400,211 + Xcc-8004.413.1 0.58 -1.4
400,212 - Xcc-8004.413.1 0.58 -2.3
400,212 - Xcc-8004.413.1 0.58 -1.2
400,212 - Xcc-8004.413.1 0.58 +0.1
400,264 + Xcc-8004.413.1 0.68 +0.9
400,264 + Xcc-8004.413.1 0.68 -0.1
400,265 - Xcc-8004.413.1 0.68 -1.7
400,317 + Xcc-8004.413.1 0.78 +2.1
400,318 - Xcc-8004.413.1 0.78 -0.1
400,318 - Xcc-8004.413.1 0.78 -3.5
400,509 + -0.5
400,561 + Xcc-8004.414.1 0.10 +3.2
400,562 - Xcc-8004.414.1 0.10 +1.3
400,562 - Xcc-8004.414.1 0.10 -2.1
400,737 - Xcc-8004.414.1 0.43 -2.0
400,810 + Xcc-8004.414.1 0.57 -0.7
400,828 - Xcc-8004.414.1 0.60 -1.1
400,860 + Xcc-8004.414.1 0.66 -1.8
400,860 + Xcc-8004.414.1 0.66 +1.6
400,861 - Xcc-8004.414.1 0.66 +0.9
400,864 + Xcc-8004.414.1 0.67 -1.1
400,864 + Xcc-8004.414.1 0.67 -1.1
400,864 + Xcc-8004.414.1 0.67 +0.5
400,926 - Xcc-8004.414.1 0.79 -0.7
400,958 - Xcc-8004.414.1 0.85 -2.2
400,958 - Xcc-8004.414.1 0.85 +0.8
401,026 + +2.0
401,105 - +0.6
401,105 - +0.6
401,146 + -2.1
401,147 - -0.3
401,157 - -1.8
401,178 + +0.9
401,209 + -0.5
401,209 + -2.4
401,238 + +0.0
401,238 + -3.2
401,238 + +0.7
401,239 - -1.7
401,239 - +0.2
401,239 - -2.1
401,248 - -2.6
401,251 - +0.4
401,293 - Xcc-8004.415.1 0.13 +0.4
401,329 + Xcc-8004.415.1 0.17 -0.8
401,330 - Xcc-8004.415.1 0.17 -2.6
401,338 - Xcc-8004.415.1 0.18 -0.5
401,454 + Xcc-8004.415.1 0.33 -0.8
401,454 + Xcc-8004.415.1 0.33 +1.3
401,455 - Xcc-8004.415.1 0.33 +0.1
401,455 - Xcc-8004.415.1 0.33 +3.2
401,479 - Xcc-8004.415.1 0.36 -2.8
401,576 + Xcc-8004.415.1 0.48 -2.9
401,629 + Xcc-8004.415.1 0.55 -0.1
401,630 - Xcc-8004.415.1 0.55 -0.6
401,948 + -2.0
401,998 + +1.5

Or see this region's nucleotide sequence