Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4008.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.4006.1 and Xcc-8004.4007.1 are separated by 24 nucleotidesXcc-8004.4007.1 and Xcc-8004.4008.1 are separated by 4 nucleotidesXcc-8004.4008.1 and Xcc-8004.4009.1 overlap by 8 nucleotides Xcc-8004.4006.1: Xcc-8004.4006.1 - 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family, at 3,880,049 to 3,881,905 Xcc-8004.4006.1 Xcc-8004.4007.1: Xcc-8004.4007.1 - FIG022979: MoxR-like ATPases, at 3,881,930 to 3,882,883 Xcc-8004.4007.1 Xcc-8004.4008.1: Xcc-8004.4008.1 - FIG002343: hypothetical protein, at 3,882,888 to 3,883,844 Xcc-8004.4008.1 Xcc-8004.4009.1: Xcc-8004.4009.1 - FIG001454: Transglutaminase-like enzymes, putative cysteine proteases, at 3,883,837 to 3,885,786 Xcc-8004.4009.1 Position (kb) 3882 3883 3884Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3881.918 kb on + strandat 3881.918 kb on + strandat 3881.918 kb on + strandat 3881.961 kb on + strandat 3882.180 kb on + strand, within Xcc-8004.4007.1at 3882.180 kb on + strand, within Xcc-8004.4007.1at 3882.180 kb on + strand, within Xcc-8004.4007.1at 3882.180 kb on + strand, within Xcc-8004.4007.1at 3882.180 kb on + strand, within Xcc-8004.4007.1at 3882.180 kb on + strand, within Xcc-8004.4007.1at 3882.181 kb on - strand, within Xcc-8004.4007.1at 3882.181 kb on - strand, within Xcc-8004.4007.1at 3882.181 kb on - strand, within Xcc-8004.4007.1at 3882.181 kb on - strand, within Xcc-8004.4007.1at 3882.181 kb on - strand, within Xcc-8004.4007.1at 3882.212 kb on + strand, within Xcc-8004.4007.1at 3882.212 kb on + strand, within Xcc-8004.4007.1at 3882.212 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.655 kb on + strand, within Xcc-8004.4007.1at 3882.732 kb on - strand, within Xcc-8004.4007.1at 3882.870 kb on + strandat 3882.987 kb on + strand, within Xcc-8004.4008.1at 3882.987 kb on + strand, within Xcc-8004.4008.1at 3882.987 kb on + strand, within Xcc-8004.4008.1at 3882.987 kb on + strand, within Xcc-8004.4008.1at 3882.987 kb on + strand, within Xcc-8004.4008.1at 3882.987 kb on + strand, within Xcc-8004.4008.1at 3882.987 kb on + strand, within Xcc-8004.4008.1at 3882.987 kb on + strand, within Xcc-8004.4008.1at 3882.987 kb on + strand, within Xcc-8004.4008.1at 3882.987 kb on + strand, within Xcc-8004.4008.1at 3882.988 kb on - strand, within Xcc-8004.4008.1at 3882.988 kb on - strand, within Xcc-8004.4008.1at 3882.988 kb on - strand, within Xcc-8004.4008.1at 3882.988 kb on - strand, within Xcc-8004.4008.1at 3882.988 kb on - strand, within Xcc-8004.4008.1at 3883.059 kb on + strand, within Xcc-8004.4008.1at 3883.059 kb on + strand, within Xcc-8004.4008.1at 3883.059 kb on + strand, within Xcc-8004.4008.1at 3883.059 kb on + strand, within Xcc-8004.4008.1at 3883.059 kb on + strand, within Xcc-8004.4008.1at 3883.059 kb on + strand, within Xcc-8004.4008.1at 3883.059 kb on + strand, within Xcc-8004.4008.1at 3883.060 kb on - strand, within Xcc-8004.4008.1at 3883.296 kb on + strand, within Xcc-8004.4008.1at 3883.297 kb on - strand, within Xcc-8004.4008.1at 3883.297 kb on - strand, within Xcc-8004.4008.1at 3883.441 kb on - strand, within Xcc-8004.4008.1at 3883.545 kb on + strand, within Xcc-8004.4008.1at 3883.620 kb on + strand, within Xcc-8004.4008.1at 3883.620 kb on + strand, within Xcc-8004.4008.1at 3883.620 kb on + strand, within Xcc-8004.4008.1at 3883.621 kb on - strand, within Xcc-8004.4008.1at 3883.621 kb on - strand, within Xcc-8004.4008.1at 3883.621 kb on - strand, within Xcc-8004.4008.1at 3883.621 kb on - strand, within Xcc-8004.4008.1at 3883.621 kb on - strand, within Xcc-8004.4008.1at 3883.680 kb on + strand, within Xcc-8004.4008.1at 3883.828 kb on + strandat 3883.828 kb on + strandat 3883.829 kb on - strandat 3883.831 kb on + strandat 3883.831 kb on + strandat 3883.848 kb on + strandat 3883.883 kb on + strandat 3884.050 kb on + strand, within Xcc-8004.4009.1at 3884.051 kb on - strand, within Xcc-8004.4009.1at 3884.051 kb on - strand, within Xcc-8004.4009.1at 3884.051 kb on - strand, within Xcc-8004.4009.1at 3884.051 kb on - strand, within Xcc-8004.4009.1at 3884.051 kb on - strand, within Xcc-8004.4009.1at 3884.132 kb on + strand, within Xcc-8004.4009.1at 3884.132 kb on + strand, within Xcc-8004.4009.1at 3884.133 kb on - strand, within Xcc-8004.4009.1at 3884.133 kb on - strand, within Xcc-8004.4009.1at 3884.133 kb on - strand, within Xcc-8004.4009.1at 3884.133 kb on - strand, within Xcc-8004.4009.1at 3884.133 kb on - strand, within Xcc-8004.4009.1at 3884.653 kb on + strand, within Xcc-8004.4009.1at 3884.653 kb on + strand, within Xcc-8004.4009.1at 3884.653 kb on + strand, within Xcc-8004.4009.1at 3884.653 kb on + strand, within Xcc-8004.4009.1at 3884.653 kb on + strand, within Xcc-8004.4009.1at 3884.653 kb on + strand, within Xcc-8004.4009.1at 3884.653 kb on + strand, within Xcc-8004.4009.1at 3884.654 kb on - strand, within Xcc-8004.4009.1at 3884.654 kb on - strand, within Xcc-8004.4009.1at 3884.654 kb on - strand, within Xcc-8004.4009.1at 3884.654 kb on - strand, within Xcc-8004.4009.1at 3884.654 kb on - strand, within Xcc-8004.4009.1at 3884.671 kb on + strand, within Xcc-8004.4009.1at 3884.671 kb on + strand, within Xcc-8004.4009.1at 3884.671 kb on + strand, within Xcc-8004.4009.1at 3884.671 kb on + strand, within Xcc-8004.4009.1at 3884.671 kb on + strand, within Xcc-8004.4009.1at 3884.671 kb on + strand, within Xcc-8004.4009.1at 3884.672 kb on - strand, within Xcc-8004.4009.1at 3884.672 kb on - strand, within Xcc-8004.4009.1at 3884.801 kb on + strand, within Xcc-8004.4009.1at 3884.801 kb on + strand, within Xcc-8004.4009.1at 3884.801 kb on + strand, within Xcc-8004.4009.1at 3884.801 kb on + strand, within Xcc-8004.4009.1at 3884.801 kb on + strand, within Xcc-8004.4009.1at 3884.801 kb on + strand, within Xcc-8004.4009.1at 3884.801 kb on + strand, within Xcc-8004.4009.1at 3884.801 kb on + strand, within Xcc-8004.4009.1at 3884.801 kb on + strand, within Xcc-8004.4009.1at 3884.801 kb on + strand, within Xcc-8004.4009.1at 3884.801 kb on + strand, within Xcc-8004.4009.1at 3884.801 kb on + strand, within Xcc-8004.4009.1at 3884.801 kb on + strand, within Xcc-8004.4009.1at 3884.802 kb on - strand, within Xcc-8004.4009.1at 3884.802 kb on - strand, within Xcc-8004.4009.1at 3884.802 kb on - strand, within Xcc-8004.4009.1at 3884.802 kb on - strand, within Xcc-8004.4009.1at 3884.802 kb on - strand, within Xcc-8004.4009.1at 3884.802 kb on - strand, within Xcc-8004.4009.1at 3884.802 kb on - strand, within Xcc-8004.4009.1at 3884.802 kb on - strand, within Xcc-8004.4009.1at 3884.802 kb on - strand, within Xcc-8004.4009.1at 3884.802 kb on - strand, within Xcc-8004.4009.1at 3884.802 kb on - strand, within Xcc-8004.4009.1at 3884.837 kb on + strand, within Xcc-8004.4009.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
remove
3,881,918 + -2.4
3,881,918 + +1.2
3,881,918 + +1.0
3,881,961 + +0.7
3,882,180 + Xcc-8004.4007.1 0.26 +0.5
3,882,180 + Xcc-8004.4007.1 0.26 -2.1
3,882,180 + Xcc-8004.4007.1 0.26 -1.7
3,882,180 + Xcc-8004.4007.1 0.26 +0.7
3,882,180 + Xcc-8004.4007.1 0.26 -1.1
3,882,180 + Xcc-8004.4007.1 0.26 +1.0
3,882,181 - Xcc-8004.4007.1 0.26 -0.1
3,882,181 - Xcc-8004.4007.1 0.26 +1.6
3,882,181 - Xcc-8004.4007.1 0.26 -2.7
3,882,181 - Xcc-8004.4007.1 0.26 -0.8
3,882,181 - Xcc-8004.4007.1 0.26 -2.3
3,882,212 + Xcc-8004.4007.1 0.30 -0.3
3,882,212 + Xcc-8004.4007.1 0.30 -1.1
3,882,212 + Xcc-8004.4007.1 0.30 +3.6
3,882,632 + Xcc-8004.4007.1 0.74 +2.4
3,882,632 + Xcc-8004.4007.1 0.74 -0.8
3,882,632 + Xcc-8004.4007.1 0.74 -2.1
3,882,632 + Xcc-8004.4007.1 0.74 +2.0
3,882,632 + Xcc-8004.4007.1 0.74 -0.8
3,882,632 + Xcc-8004.4007.1 0.74 +2.2
3,882,632 + Xcc-8004.4007.1 0.74 -2.3
3,882,632 + Xcc-8004.4007.1 0.74 +1.2
3,882,632 + Xcc-8004.4007.1 0.74 -0.4
3,882,632 + Xcc-8004.4007.1 0.74 +1.0
3,882,632 + Xcc-8004.4007.1 0.74 +0.1
3,882,632 + Xcc-8004.4007.1 0.74 +0.3
3,882,632 + Xcc-8004.4007.1 0.74 +0.1
3,882,632 + Xcc-8004.4007.1 0.74 +0.3
3,882,632 + Xcc-8004.4007.1 0.74 -1.4
3,882,632 + Xcc-8004.4007.1 0.74 -0.7
3,882,632 + Xcc-8004.4007.1 0.74 -0.2
3,882,632 + Xcc-8004.4007.1 0.74 -0.6
3,882,632 + Xcc-8004.4007.1 0.74 +1.4
3,882,632 + Xcc-8004.4007.1 0.74 -1.7
3,882,633 - Xcc-8004.4007.1 0.74 +0.0
3,882,633 - Xcc-8004.4007.1 0.74 -1.2
3,882,633 - Xcc-8004.4007.1 0.74 +1.7
3,882,633 - Xcc-8004.4007.1 0.74 -0.4
3,882,633 - Xcc-8004.4007.1 0.74 +1.0
3,882,633 - Xcc-8004.4007.1 0.74 -0.6
3,882,633 - Xcc-8004.4007.1 0.74 -0.9
3,882,633 - Xcc-8004.4007.1 0.74 -0.3
3,882,633 - Xcc-8004.4007.1 0.74 -1.8
3,882,633 - Xcc-8004.4007.1 0.74 +2.1
3,882,633 - Xcc-8004.4007.1 0.74 +0.5
3,882,633 - Xcc-8004.4007.1 0.74 +0.2
3,882,633 - Xcc-8004.4007.1 0.74 -1.3
3,882,633 - Xcc-8004.4007.1 0.74 -0.7
3,882,633 - Xcc-8004.4007.1 0.74 -1.1
3,882,633 - Xcc-8004.4007.1 0.74 -0.5
3,882,633 - Xcc-8004.4007.1 0.74 +1.5
3,882,633 - Xcc-8004.4007.1 0.74 -0.0
3,882,633 - Xcc-8004.4007.1 0.74 +0.1
3,882,633 - Xcc-8004.4007.1 0.74 -1.2
3,882,633 - Xcc-8004.4007.1 0.74 +0.5
3,882,655 + Xcc-8004.4007.1 0.76 +0.7
3,882,732 - Xcc-8004.4007.1 0.84 -0.2
3,882,870 + -2.7
3,882,987 + Xcc-8004.4008.1 0.10 +2.4
3,882,987 + Xcc-8004.4008.1 0.10 +1.1
3,882,987 + Xcc-8004.4008.1 0.10 +0.4
3,882,987 + Xcc-8004.4008.1 0.10 +0.5
3,882,987 + Xcc-8004.4008.1 0.10 -0.7
3,882,987 + Xcc-8004.4008.1 0.10 -0.6
3,882,987 + Xcc-8004.4008.1 0.10 +1.0
3,882,987 + Xcc-8004.4008.1 0.10 +1.5
3,882,987 + Xcc-8004.4008.1 0.10 -2.1
3,882,987 + Xcc-8004.4008.1 0.10 +1.0
3,882,988 - Xcc-8004.4008.1 0.10 +0.7
3,882,988 - Xcc-8004.4008.1 0.10 -2.7
3,882,988 - Xcc-8004.4008.1 0.10 +0.8
3,882,988 - Xcc-8004.4008.1 0.10 +0.8
3,882,988 - Xcc-8004.4008.1 0.10 +0.7
3,883,059 + Xcc-8004.4008.1 0.18 -1.1
3,883,059 + Xcc-8004.4008.1 0.18 -0.1
3,883,059 + Xcc-8004.4008.1 0.18 +1.4
3,883,059 + Xcc-8004.4008.1 0.18 +1.5
3,883,059 + Xcc-8004.4008.1 0.18 +1.2
3,883,059 + Xcc-8004.4008.1 0.18 -1.4
3,883,059 + Xcc-8004.4008.1 0.18 +1.0
3,883,060 - Xcc-8004.4008.1 0.18 +0.7
3,883,296 + Xcc-8004.4008.1 0.43 -1.0
3,883,297 - Xcc-8004.4008.1 0.43 +0.0
3,883,297 - Xcc-8004.4008.1 0.43 -0.1
3,883,441 - Xcc-8004.4008.1 0.58 -1.5
3,883,545 + Xcc-8004.4008.1 0.69 -0.4
3,883,620 + Xcc-8004.4008.1 0.76 +1.9
3,883,620 + Xcc-8004.4008.1 0.76 -2.0
3,883,620 + Xcc-8004.4008.1 0.76 +0.8
3,883,621 - Xcc-8004.4008.1 0.77 -2.4
3,883,621 - Xcc-8004.4008.1 0.77 +0.2
3,883,621 - Xcc-8004.4008.1 0.77 -1.2
3,883,621 - Xcc-8004.4008.1 0.77 +0.1
3,883,621 - Xcc-8004.4008.1 0.77 -0.9
3,883,680 + Xcc-8004.4008.1 0.83 +0.5
3,883,828 + -1.2
3,883,828 + -0.7
3,883,829 - +0.0
3,883,831 + -0.2
3,883,831 + -0.8
3,883,848 + +2.3
3,883,883 + +0.4
3,884,050 + Xcc-8004.4009.1 0.11 +0.2
3,884,051 - Xcc-8004.4009.1 0.11 +2.2
3,884,051 - Xcc-8004.4009.1 0.11 +0.4
3,884,051 - Xcc-8004.4009.1 0.11 -1.7
3,884,051 - Xcc-8004.4009.1 0.11 -1.1
3,884,051 - Xcc-8004.4009.1 0.11 +1.4
3,884,132 + Xcc-8004.4009.1 0.15 -1.8
3,884,132 + Xcc-8004.4009.1 0.15 -0.5
3,884,133 - Xcc-8004.4009.1 0.15 +0.1
3,884,133 - Xcc-8004.4009.1 0.15 +0.1
3,884,133 - Xcc-8004.4009.1 0.15 -1.0
3,884,133 - Xcc-8004.4009.1 0.15 -2.6
3,884,133 - Xcc-8004.4009.1 0.15 +0.5
3,884,653 + Xcc-8004.4009.1 0.42 +0.8
3,884,653 + Xcc-8004.4009.1 0.42 -1.4
3,884,653 + Xcc-8004.4009.1 0.42 +0.3
3,884,653 + Xcc-8004.4009.1 0.42 +1.2
3,884,653 + Xcc-8004.4009.1 0.42 -0.2
3,884,653 + Xcc-8004.4009.1 0.42 -0.1
3,884,653 + Xcc-8004.4009.1 0.42 +1.2
3,884,654 - Xcc-8004.4009.1 0.42 +1.4
3,884,654 - Xcc-8004.4009.1 0.42 +1.6
3,884,654 - Xcc-8004.4009.1 0.42 +0.2
3,884,654 - Xcc-8004.4009.1 0.42 +0.9
3,884,654 - Xcc-8004.4009.1 0.42 +0.5
3,884,671 + Xcc-8004.4009.1 0.43 -1.2
3,884,671 + Xcc-8004.4009.1 0.43 +0.5
3,884,671 + Xcc-8004.4009.1 0.43 -3.2
3,884,671 + Xcc-8004.4009.1 0.43 +0.5
3,884,671 + Xcc-8004.4009.1 0.43 +0.6
3,884,671 + Xcc-8004.4009.1 0.43 +1.1
3,884,672 - Xcc-8004.4009.1 0.43 -3.2
3,884,672 - Xcc-8004.4009.1 0.43 +1.6
3,884,801 + Xcc-8004.4009.1 0.49 -3.1
3,884,801 + Xcc-8004.4009.1 0.49 +0.6
3,884,801 + Xcc-8004.4009.1 0.49 +0.2
3,884,801 + Xcc-8004.4009.1 0.49 +0.2
3,884,801 + Xcc-8004.4009.1 0.49 +0.0
3,884,801 + Xcc-8004.4009.1 0.49 -0.6
3,884,801 + Xcc-8004.4009.1 0.49 +0.7
3,884,801 + Xcc-8004.4009.1 0.49 +0.8
3,884,801 + Xcc-8004.4009.1 0.49 +0.8
3,884,801 + Xcc-8004.4009.1 0.49 +0.3
3,884,801 + Xcc-8004.4009.1 0.49 +1.1
3,884,801 + Xcc-8004.4009.1 0.49 +0.4
3,884,801 + Xcc-8004.4009.1 0.49 -0.3
3,884,802 - Xcc-8004.4009.1 0.49 -0.8
3,884,802 - Xcc-8004.4009.1 0.49 -1.2
3,884,802 - Xcc-8004.4009.1 0.49 +1.3
3,884,802 - Xcc-8004.4009.1 0.49 +0.5
3,884,802 - Xcc-8004.4009.1 0.49 -2.4
3,884,802 - Xcc-8004.4009.1 0.49 +2.4
3,884,802 - Xcc-8004.4009.1 0.49 -2.6
3,884,802 - Xcc-8004.4009.1 0.49 +2.9
3,884,802 - Xcc-8004.4009.1 0.49 -1.3
3,884,802 - Xcc-8004.4009.1 0.49 -1.2
3,884,802 - Xcc-8004.4009.1 0.49 -0.3
3,884,837 + Xcc-8004.4009.1 0.51 +1.2

Or see this region's nucleotide sequence