Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3866.1 and Xcc-8004.3867.1 overlap by 8 nucleotides Xcc-8004.3867.1 and Xcc-8004.3868.1 overlap by 35 nucleotides
Xcc-8004.3866.1: Xcc-8004.3866.1 - two-component system sensor protein, at 3,732,080 to 3,733,363
Xcc-8004.3866.1
Xcc-8004.3867.1: Xcc-8004.3867.1 - Two-component system regulatory protein, at 3,733,356 to 3,734,075
Xcc-8004.3867.1
Xcc-8004.3868.1: Xcc-8004.3868.1 - Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB, at 3,734,041 to 3,735,945
Xcc-8004.3868.1
Position (kb) 3733
3734
3735 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3732.759 kb on + strand, within Xcc-8004.3866.1 at 3732.760 kb on - strand, within Xcc-8004.3866.1 at 3732.760 kb on - strand, within Xcc-8004.3866.1 at 3732.786 kb on + strand, within Xcc-8004.3866.1 at 3732.787 kb on - strand, within Xcc-8004.3866.1 at 3732.787 kb on - strand, within Xcc-8004.3866.1 at 3732.787 kb on - strand, within Xcc-8004.3866.1 at 3732.903 kb on + strand, within Xcc-8004.3866.1 at 3732.903 kb on + strand, within Xcc-8004.3866.1 at 3732.903 kb on + strand, within Xcc-8004.3866.1 at 3732.903 kb on + strand, within Xcc-8004.3866.1 at 3732.903 kb on + strand, within Xcc-8004.3866.1 at 3732.903 kb on + strand, within Xcc-8004.3866.1 at 3732.904 kb on - strand, within Xcc-8004.3866.1 at 3732.904 kb on - strand, within Xcc-8004.3866.1 at 3732.904 kb on - strand, within Xcc-8004.3866.1 at 3732.904 kb on - strand, within Xcc-8004.3866.1 at 3732.904 kb on - strand, within Xcc-8004.3866.1 at 3733.269 kb on + strand at 3733.270 kb on - strand at 3733.357 kb on + strand at 3733.357 kb on + strand at 3733.357 kb on + strand at 3733.358 kb on - strand at 3733.489 kb on + strand, within Xcc-8004.3867.1 at 3733.489 kb on + strand, within Xcc-8004.3867.1 at 3733.489 kb on + strand, within Xcc-8004.3867.1 at 3733.490 kb on - strand, within Xcc-8004.3867.1 at 3733.490 kb on - strand, within Xcc-8004.3867.1 at 3733.490 kb on - strand, within Xcc-8004.3867.1 at 3733.536 kb on + strand, within Xcc-8004.3867.1 at 3733.780 kb on + strand, within Xcc-8004.3867.1 at 3733.780 kb on + strand, within Xcc-8004.3867.1 at 3733.780 kb on + strand, within Xcc-8004.3867.1 at 3733.781 kb on - strand, within Xcc-8004.3867.1 at 3733.781 kb on - strand, within Xcc-8004.3867.1 at 3733.781 kb on - strand, within Xcc-8004.3867.1 at 3733.942 kb on + strand, within Xcc-8004.3867.1 at 3733.942 kb on + strand, within Xcc-8004.3867.1 at 3733.942 kb on + strand, within Xcc-8004.3867.1 at 3733.943 kb on - strand, within Xcc-8004.3867.1 at 3733.943 kb on - strand, within Xcc-8004.3867.1 at 3733.943 kb on - strand, within Xcc-8004.3867.1 at 3734.001 kb on - strand, within Xcc-8004.3867.1 at 3734.020 kb on + strand at 3734.020 kb on + strand at 3734.120 kb on + strand at 3734.121 kb on - strand at 3734.413 kb on + strand, within Xcc-8004.3868.1 at 3734.413 kb on + strand, within Xcc-8004.3868.1 at 3734.413 kb on + strand, within Xcc-8004.3868.1 at 3734.413 kb on + strand, within Xcc-8004.3868.1 at 3734.414 kb on - strand, within Xcc-8004.3868.1 at 3734.458 kb on + strand, within Xcc-8004.3868.1 at 3734.459 kb on - strand, within Xcc-8004.3868.1 at 3734.459 kb on - strand, within Xcc-8004.3868.1 at 3734.459 kb on - strand, within Xcc-8004.3868.1 at 3734.578 kb on + strand, within Xcc-8004.3868.1 at 3734.966 kb on - strand, within Xcc-8004.3868.1 at 3735.040 kb on + strand, within Xcc-8004.3868.1 at 3735.043 kb on + strand, within Xcc-8004.3868.1 at 3735.044 kb on - strand, within Xcc-8004.3868.1 at 3735.044 kb on - strand, within Xcc-8004.3868.1 at 3735.044 kb on - strand, within Xcc-8004.3868.1 at 3735.044 kb on - strand, within Xcc-8004.3868.1
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days remove 3,732,759 + Xcc-8004.3866.1 0.53 +0.1 3,732,760 - Xcc-8004.3866.1 0.53 -2.4 3,732,760 - Xcc-8004.3866.1 0.53 -2.9 3,732,786 + Xcc-8004.3866.1 0.55 -0.6 3,732,787 - Xcc-8004.3866.1 0.55 -0.3 3,732,787 - Xcc-8004.3866.1 0.55 -2.0 3,732,787 - Xcc-8004.3866.1 0.55 +0.2 3,732,903 + Xcc-8004.3866.1 0.64 -1.9 3,732,903 + Xcc-8004.3866.1 0.64 -1.3 3,732,903 + Xcc-8004.3866.1 0.64 +0.6 3,732,903 + Xcc-8004.3866.1 0.64 +3.3 3,732,903 + Xcc-8004.3866.1 0.64 +1.4 3,732,903 + Xcc-8004.3866.1 0.64 -1.5 3,732,904 - Xcc-8004.3866.1 0.64 -1.1 3,732,904 - Xcc-8004.3866.1 0.64 -1.2 3,732,904 - Xcc-8004.3866.1 0.64 -1.3 3,732,904 - Xcc-8004.3866.1 0.64 +0.0 3,732,904 - Xcc-8004.3866.1 0.64 -0.2 3,733,269 + -1.4 3,733,270 - -1.6 3,733,357 + -3.1 3,733,357 + +1.9 3,733,357 + -0.1 3,733,358 - +1.3 3,733,489 + Xcc-8004.3867.1 0.18 +0.3 3,733,489 + Xcc-8004.3867.1 0.18 -0.1 3,733,489 + Xcc-8004.3867.1 0.18 -2.6 3,733,490 - Xcc-8004.3867.1 0.19 +0.4 3,733,490 - Xcc-8004.3867.1 0.19 -2.1 3,733,490 - Xcc-8004.3867.1 0.19 -1.6 3,733,536 + Xcc-8004.3867.1 0.25 +1.6 3,733,780 + Xcc-8004.3867.1 0.59 -0.5 3,733,780 + Xcc-8004.3867.1 0.59 -1.2 3,733,780 + Xcc-8004.3867.1 0.59 +0.3 3,733,781 - Xcc-8004.3867.1 0.59 -0.7 3,733,781 - Xcc-8004.3867.1 0.59 +0.8 3,733,781 - Xcc-8004.3867.1 0.59 -0.9 3,733,942 + Xcc-8004.3867.1 0.81 -0.8 3,733,942 + Xcc-8004.3867.1 0.81 -0.3 3,733,942 + Xcc-8004.3867.1 0.81 +0.8 3,733,943 - Xcc-8004.3867.1 0.82 -0.1 3,733,943 - Xcc-8004.3867.1 0.82 +0.2 3,733,943 - Xcc-8004.3867.1 0.82 +1.7 3,734,001 - Xcc-8004.3867.1 0.90 -0.4 3,734,020 + +2.3 3,734,020 + +1.9 3,734,120 + -1.8 3,734,121 - +2.2 3,734,413 + Xcc-8004.3868.1 0.20 +0.9 3,734,413 + Xcc-8004.3868.1 0.20 +2.5 3,734,413 + Xcc-8004.3868.1 0.20 +0.6 3,734,413 + Xcc-8004.3868.1 0.20 -3.2 3,734,414 - Xcc-8004.3868.1 0.20 -0.9 3,734,458 + Xcc-8004.3868.1 0.22 +1.0 3,734,459 - Xcc-8004.3868.1 0.22 -1.6 3,734,459 - Xcc-8004.3868.1 0.22 +0.1 3,734,459 - Xcc-8004.3868.1 0.22 +3.5 3,734,578 + Xcc-8004.3868.1 0.28 +1.2 3,734,966 - Xcc-8004.3868.1 0.49 -3.1 3,735,040 + Xcc-8004.3868.1 0.52 +1.8 3,735,043 + Xcc-8004.3868.1 0.53 +0.7 3,735,044 - Xcc-8004.3868.1 0.53 -0.1 3,735,044 - Xcc-8004.3868.1 0.53 +0.2 3,735,044 - Xcc-8004.3868.1 0.53 -2.2 3,735,044 - Xcc-8004.3868.1 0.53 -1.8
Or see this region's nucleotide sequence