Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3772.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3771.1 and Xcc-8004.3772.1 are separated by 1 nucleotidesXcc-8004.3772.1 and Xcc-8004.3773.1 are separated by 258 nucleotides Xcc-8004.3771.1: Xcc-8004.3771.1 - 2-nitropropane dioxygenase, at 3,643,918 to 3,645,012 Xcc-8004.3771.1 Xcc-8004.3772.1: Xcc-8004.3772.1 - FIG00469906: hypothetical protein, at 3,645,014 to 3,645,853 Xcc-8004.3772.1 Xcc-8004.3773.1: Xcc-8004.3773.1 - putative; ORF located using Glimmer/Genemark, at 3,646,112 to 3,647,428 Xcc-8004.3773.1 Position (kb) 3645 3646Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3644.084 kb on - strand, within Xcc-8004.3771.1at 3644.135 kb on + strand, within Xcc-8004.3771.1at 3644.135 kb on + strand, within Xcc-8004.3771.1at 3644.135 kb on + strand, within Xcc-8004.3771.1at 3644.135 kb on + strand, within Xcc-8004.3771.1at 3644.136 kb on - strand, within Xcc-8004.3771.1at 3644.136 kb on - strand, within Xcc-8004.3771.1at 3644.136 kb on - strand, within Xcc-8004.3771.1at 3644.136 kb on - strand, within Xcc-8004.3771.1at 3644.978 kb on + strandat 3644.978 kb on + strandat 3644.979 kb on - strandat 3645.147 kb on + strand, within Xcc-8004.3772.1at 3645.148 kb on - strand, within Xcc-8004.3772.1at 3645.148 kb on - strand, within Xcc-8004.3772.1at 3645.148 kb on - strand, within Xcc-8004.3772.1at 3645.487 kb on - strand, within Xcc-8004.3772.1at 3645.487 kb on - strand, within Xcc-8004.3772.1at 3645.487 kb on - strand, within Xcc-8004.3772.1at 3645.507 kb on + strand, within Xcc-8004.3772.1at 3645.507 kb on + strand, within Xcc-8004.3772.1at 3645.507 kb on + strand, within Xcc-8004.3772.1at 3645.507 kb on + strand, within Xcc-8004.3772.1at 3645.507 kb on + strand, within Xcc-8004.3772.1at 3645.508 kb on - strand, within Xcc-8004.3772.1at 3645.508 kb on - strand, within Xcc-8004.3772.1at 3645.508 kb on - strand, within Xcc-8004.3772.1at 3645.508 kb on - strand, within Xcc-8004.3772.1at 3645.508 kb on - strand, within Xcc-8004.3772.1at 3645.508 kb on - strand, within Xcc-8004.3772.1at 3645.508 kb on - strand, within Xcc-8004.3772.1at 3645.795 kb on + strandat 3645.795 kb on + strandat 3645.795 kb on + strandat 3645.796 kb on - strandat 3645.796 kb on - strandat 3645.834 kb on + strandat 3645.834 kb on + strandat 3645.835 kb on - strandat 3645.835 kb on - strandat 3645.931 kb on + strandat 3645.931 kb on + strandat 3645.931 kb on + strandat 3645.932 kb on - strandat 3645.958 kb on + strandat 3645.959 kb on - strandat 3646.116 kb on + strandat 3646.117 kb on - strandat 3646.117 kb on - strandat 3646.117 kb on - strandat 3646.117 kb on - strandat 3646.296 kb on + strand, within Xcc-8004.3773.1at 3646.296 kb on + strand, within Xcc-8004.3773.1at 3646.296 kb on + strand, within Xcc-8004.3773.1at 3646.296 kb on + strand, within Xcc-8004.3773.1at 3646.312 kb on + strand, within Xcc-8004.3773.1at 3646.313 kb on - strand, within Xcc-8004.3773.1at 3646.456 kb on - strand, within Xcc-8004.3773.1at 3646.604 kb on + strand, within Xcc-8004.3773.1at 3646.605 kb on - strand, within Xcc-8004.3773.1at 3646.668 kb on - strand, within Xcc-8004.3773.1at 3646.723 kb on - strand, within Xcc-8004.3773.1at 3646.723 kb on - strand, within Xcc-8004.3773.1at 3646.845 kb on + strand, within Xcc-8004.3773.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
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3,644,084 - Xcc-8004.3771.1 0.15 +0.5
3,644,135 + Xcc-8004.3771.1 0.20 +0.3
3,644,135 + Xcc-8004.3771.1 0.20 +1.4
3,644,135 + Xcc-8004.3771.1 0.20 -0.9
3,644,135 + Xcc-8004.3771.1 0.20 +0.2
3,644,136 - Xcc-8004.3771.1 0.20 -0.4
3,644,136 - Xcc-8004.3771.1 0.20 -1.2
3,644,136 - Xcc-8004.3771.1 0.20 -1.0
3,644,136 - Xcc-8004.3771.1 0.20 +1.3
3,644,978 + -3.4
3,644,978 + +1.2
3,644,979 - +1.4
3,645,147 + Xcc-8004.3772.1 0.16 -0.8
3,645,148 - Xcc-8004.3772.1 0.16 +0.4
3,645,148 - Xcc-8004.3772.1 0.16 +4.0
3,645,148 - Xcc-8004.3772.1 0.16 -0.5
3,645,487 - Xcc-8004.3772.1 0.56 -0.4
3,645,487 - Xcc-8004.3772.1 0.56 -1.3
3,645,487 - Xcc-8004.3772.1 0.56 +2.7
3,645,507 + Xcc-8004.3772.1 0.59 -0.6
3,645,507 + Xcc-8004.3772.1 0.59 +2.4
3,645,507 + Xcc-8004.3772.1 0.59 +2.4
3,645,507 + Xcc-8004.3772.1 0.59 +0.0
3,645,507 + Xcc-8004.3772.1 0.59 -1.2
3,645,508 - Xcc-8004.3772.1 0.59 +0.6
3,645,508 - Xcc-8004.3772.1 0.59 -1.0
3,645,508 - Xcc-8004.3772.1 0.59 -0.8
3,645,508 - Xcc-8004.3772.1 0.59 +2.5
3,645,508 - Xcc-8004.3772.1 0.59 -2.5
3,645,508 - Xcc-8004.3772.1 0.59 -0.4
3,645,508 - Xcc-8004.3772.1 0.59 +0.1
3,645,795 + +1.0
3,645,795 + +1.4
3,645,795 + -0.8
3,645,796 - +0.1
3,645,796 - -0.2
3,645,834 + -0.8
3,645,834 + -1.0
3,645,835 - +1.4
3,645,835 - -0.2
3,645,931 + +0.3
3,645,931 + -2.2
3,645,931 + -0.7
3,645,932 - +0.7
3,645,958 + +2.9
3,645,959 - +1.3
3,646,116 + +0.6
3,646,117 - -0.6
3,646,117 - +2.3
3,646,117 - -0.1
3,646,117 - -1.9
3,646,296 + Xcc-8004.3773.1 0.14 +0.5
3,646,296 + Xcc-8004.3773.1 0.14 -1.9
3,646,296 + Xcc-8004.3773.1 0.14 +1.8
3,646,296 + Xcc-8004.3773.1 0.14 -2.2
3,646,312 + Xcc-8004.3773.1 0.15 +0.4
3,646,313 - Xcc-8004.3773.1 0.15 -0.5
3,646,456 - Xcc-8004.3773.1 0.26 +0.8
3,646,604 + Xcc-8004.3773.1 0.37 +0.5
3,646,605 - Xcc-8004.3773.1 0.37 +0.6
3,646,668 - Xcc-8004.3773.1 0.42 +1.4
3,646,723 - Xcc-8004.3773.1 0.46 -0.0
3,646,723 - Xcc-8004.3773.1 0.46 +0.1
3,646,845 + Xcc-8004.3773.1 0.56 -1.6

Or see this region's nucleotide sequence